Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841           29   2.3  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    29   3.0  
10_08_0239 - 16099673-16100251                                         28   4.0  
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834...    28   4.0  
11_01_0606 + 4831102-4833033                                           28   5.2  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    28   5.2  
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294...    28   5.2  
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    27   6.9  

>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
          Length = 348

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -2

Query: 496 GDGYGVGAVHGVRYANSDWVWHRSVDGNRVRSWNGYSDVSSYSGVHISPNNSSSGTLGG 320
           G GYG G   G        V   S +G R     GY D ++Y G + S   +S G  GG
Sbjct: 162 GGGYGGGGYGGQDAYGGRGVGGYS-EGGRGYVGGGYGDGNNYGGYNTSGGYNSEGGRGG 219


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 433 HRSVDGNRVRSWNGYSDVSSYSGVHISPNNSSSGTLGGD 317
           H SVD +  R+ +  SD+  ++ + +   +SSS +L G+
Sbjct: 605 HTSVDSSSQRTMSSLSDIIHFNSLRMKSLSSSSSSLSGN 643


>10_08_0239 - 16099673-16100251
          Length = 192

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 499 SGDGYGVGAVHGVRYANSDWVWHRSVDGNRVRSWNGYSDVSSYSGVHISPNNSSSGTLGG 320
           S    G GA  G   A   W  +    G+   S + Y+D + Y G + + N   +G  GG
Sbjct: 111 SSSAGGAGAGGGAGQAGGYWPSNGQGSGSGTGSGSSYADNNYYGGPYANANAGGNG--GG 168

Query: 319 DHTG 308
           +  G
Sbjct: 169 NGQG 172



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 514 GYWVRSGDGYGVGAVHGVRYANSDW 440
           GYW  +G G G G   G  YA++++
Sbjct: 128 GYWPSNGQGSGSGTGSGSSYADNNY 152


>03_05_0222 +
           22082863-22082938,22083261-22083333,22083451-22083496,
           22083639-22083753,22083847-22083926,22084022-22084621,
           22084718-22084822,22084916-22085248
          Length = 475

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 152 STRGRKDQHSDPGVRCASEWFYWVQGRPEPRQPRKE 45
           ST G  DQ +   +R A      V+G+PEP +P+K+
Sbjct: 415 STGGTVDQKTIDSIRQAIGQNIQVKGQPEPSEPQKK 450


>11_01_0606 + 4831102-4833033
          Length = 643

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 427 SVDGNRVRSWNGYSDVSSYSGVHISPNNSSS 335
           ++D +  +SWN  S+   +SGVH +   SSS
Sbjct: 58  AMDSSLTKSWNTSSNPCEWSGVHCTSAASSS 88


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 505 VRSGDGYGVGAVHGVRYANSD 443
           VRSG G G GA HGV   NS+
Sbjct: 274 VRSGGGGGGGAAHGVLLLNSN 294


>03_01_0377 +
           2940333-2940418,2940512-2940658,2940741-2940809,
           2940958-2941123,2941208-2941436,2941528-2942054
          Length = 407

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 53  VVASVLGDPEPSKTIQKRSGHLGHYADLYGHGLSSGIAVHAGPAF 187
           VVA  LG  +PS + +  +  L HY D  GHGL     +  G  F
Sbjct: 167 VVAKWLGLTKPSSSGRLATRGLAHYPD--GHGLDPRFKMFVGHGF 209


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 472 VHGVRYANSDWVWHRSVDGNRVRSWNGYSDVSSYSGVHISPNNSS 338
           VHG+  + SDW +  +V   + R  + +    SY G+H +  N+S
Sbjct: 49  VHGIIASPSDWTYGEAV--LKKRLGDNFFIYGSYIGLHFANENNS 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,622
Number of Sequences: 37544
Number of extensions: 188700
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)