Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.3  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 108 DFPQFSTLCRGRQHSPAPQRSGNTAETSLKFQYV 7
           + PQF  L   ++HS     +GN +  + + Q+V
Sbjct: 184 ELPQFRVLGHRQRHSTIHLSTGNYSRLACEIQFV 217


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 159 YDTVEKRAQSYLDADIISSGDL 224
           YD++E R  +  D D I+  +L
Sbjct: 167 YDSIEARDSAIFDGDFITENNL 188


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 51  VVALVSADVHDKELKIEENPRVYCGRHLANARMILC 158
           +  ++  +V DK +K E+N  +   R L     +LC
Sbjct: 269 IPTVLDRNVIDKWIKTEDNESLNAARMLIRQEGLLC 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,198
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)