Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   1.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   3.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   9.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   9.0  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 6   GSLIIFVCFC*ICSASIHVA 65
           GSLII+VCFC  C+ + + A
Sbjct: 152 GSLIIYVCFCISCALARNYA 171


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 227 TESYKITSLKSAMAICTKKKKVS 159
           T + +ITSLKSA  +C++ K++S
Sbjct: 638 TVNQRITSLKSAAKVCSESKELS 660


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 302 CFE*HMSYKRFYFIFEKE 355
           CFE H++YK ++  FE E
Sbjct: 281 CFESHLNYKAWHLEFENE 298


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 426 KETTSIPPSSPRD 464
           +ETT I PSSPRD
Sbjct: 594 QETTEIDPSSPRD 606


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 221 SYKITSLK---SAMAICTKKKKVSKQRGSIMF*QLPC*SDSYDCMVNNFLLN 75
           +YK+   K   S + I  K    S+   SI+F + P  S+  DC+    LLN
Sbjct: 26  NYKVEKQKLDASPLTIHGKFNTYSRGNISIVFGEAPSNSNIKDCLAEGTLLN 77


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 314 HMSYKRFYFIFEKERTIKYDD 376
           H+  KRF + FE++  IK +D
Sbjct: 402 HLQLKRFEYDFERDMMIKIND 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,632
Number of Sequences: 5004
Number of extensions: 39626
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)