Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 279 FLGLYKKKVEKSINLLVH*KLQNNISEVSYGNLHEKKKSF*TKRINHVL 133
           F GL KKK+EKS   L   + + N  ++SYG L      +  K  N V+
Sbjct: 458 FEGLTKKKIEKSEKRLYDLERRINKVKISYGKLETHSDKY--KEANEVV 504


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 279 FLGLYKKKVEKSINLLVH*KLQNNISEVSYGNLHEKKKSF*TKRINHVL 133
           F GL KKK+EKS   L   + + N  ++SYG L      +  K  N V+
Sbjct: 458 FEGLTKKKIEKSEKRLYDLERRINKVKISYGKLETHSDKY--KEANEVV 504


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 385 ISCVVIFYSAFFFEYKIKTFITHVLFE 305
           ISC V+   A  F  K+ TF+ H +F+
Sbjct: 379 ISCTVVMLVAAIFMEKLYTFVGHAIFK 405


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 388 HISCVVIFYSAFFFEYKIKTFITHVLFETKILKTDRISWAL*KKSREIYKLTCSL 224
           ++SC + FY  F   + +   I H+ F   +L T  ++  L K  R I  ++  L
Sbjct: 57  YVSCFIPFYDFFILTFTVLMAIPHIGF-ASVLYTKFLAPFLRKYERRIDNISAKL 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,042
Number of Sequences: 27780
Number of extensions: 216288
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)