Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.2  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   3.9  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.8  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   9.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 407 RIGGASVGGTIRNNPKRGGGG 345
           R GGAS GG  R++P+   GG
Sbjct: 882 RRGGASAGGVSRDSPRYSRGG 902


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 407 RIGGASVGGTIRNNPKRGGGGIR 339
           R+G  + G TIRN P R   G+R
Sbjct: 30  RLGAPATGITIRNQPIRSYSGLR 52


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 6  FFFLKISNLGLFIQFNTCTRII 71
          FFFL  S   +F+ F+ CT +I
Sbjct: 2  FFFLVFSACEVFVGFSLCTLVI 23


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 172 KTECLCTFSLVIHLISFTYASS 237
           K+    TFS +IHL SF Y +S
Sbjct: 33  KSSAPSTFSKLIHLTSFLYPNS 54


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 327 IALISNSSTSSFRIVSYSTPHTRTTNSISSLGP 425
           I  ++  STSS    +Y+T    +T +++S GP
Sbjct: 844 ITSLNLESTSSVTSTAYTTDSVTSTTALTSQGP 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,245
Number of Sequences: 5004
Number of extensions: 24361
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)