Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736...    38   0.004
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942...    37   0.009
06_01_1037 - 8140602-8140782,8141489-8141545,8141649-8141845,814...    35   0.046
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677         33   0.11 
12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055         33   0.18 
07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569           32   0.24 
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436...    27   9.1  

>08_02_0737 -
           20572068-20572290,20572785-20572841,20573482-20573672,
           20574566-20574700,20575722-20575871
          Length = 251

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = -1

Query: 521 ADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIR 372
           +DA+ A+K+YN V LDG+AM I++  S++  L    R  + GAS G   R
Sbjct: 106 SDAIAALKRYNNVLLDGKAMKIEVIGSDLG-LPMTPRINVVGASNGRPTR 154


>03_02_0553 -
           9420960-9421164,9421634-9421812,9421902-9421970,
           9422452-9422607,9422756-9422968
          Length = 273

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPE--------ARNRIGGASVGGTI---R 372
           DAV A+K+YN V LDG+ M I++  +   T             RN    A  GG     +
Sbjct: 158 DAVAAVKKYNNVQLDGKPMKIEILGTNTPTAAAALPANNGGYVRNVAKSAPRGGPAGLPQ 217

Query: 371 NNPKRGGGGIRNQXXXXXXXXXXXXXXXXXXGKRPVPTAEQLDAELDAY 225
             P+  GGG R                      +P  +AE+LDA+L+ Y
Sbjct: 218 GRPRPRGGGRRRGGGGGSGGPGGSGGRRGKERSQP-KSAEELDADLEKY 265


>06_01_1037 -
           8140602-8140782,8141489-8141545,8141649-8141845,
           8143174-8143242,8143347-8143490,8144055-8144225
          Length = 272

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 521 ADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEA 414
           ++AV A+K+YN V LDG+ M I++  +++    P A
Sbjct: 139 SEAVAALKRYNNVRLDGKPMKIEVIGADLGMAAPSA 174


>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
          Length = 174

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -1

Query: 521 ADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKR 357
           +DA+ A+K+YN V LDG+ M ++L    IN + P      G A+  G     PKR
Sbjct: 119 SDALAAVKRYNNVQLDGKPMKLELI--GIN-IEPPPPAMFGFAAPAGYFDFPPKR 170


>12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055
          Length = 178

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -1

Query: 521 ADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKR 357
           +DA+ A+K+YN V LDG+ M ++L    IN + P      G A+  G     PKR
Sbjct: 123 SDALAAVKRYNNVQLDGKPMKLELI--GIN-IEPPPPAIFGFAAPAGYFDFPPKR 174


>07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569
          Length = 134

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLA--TSEINTLRPEA 414
           DA++A+K+Y+GV LDG  M I L    SE + + P A
Sbjct: 78  DALEAIKRYDGVILDGNPMKIDLIGNNSETSPMPPTA 114


>09_05_0008 +
           20042390-20042845,20043323-20043457,20043539-20043679,
           20043771-20043882,20044084-20044154,20044251-20044405,
           20044484-20044595,20044932-20045033,20045116-20045176,
           20045251-20045422,20045512-20045608,20045692-20045786,
           20045881-20046014,20046208-20046422
          Length = 685

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 467 AMNIQLAT-SEINTLRP-EARNRIGGASVGGTIRNNPKRGGGGIR 339
           A N  + T  E+  L P + R + GG+  GG   N    GGGG R
Sbjct: 616 AQNAAMVTVEEVKQLPPLQEREQSGGSRGGGRFGNRRFSGGGGGR 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,608
Number of Sequences: 37544
Number of extensions: 155911
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)