Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical pr...    38   0.003
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    34   0.054
Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical pr...    30   0.87 
DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding p...    30   0.87 

>Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical
           protein F23B2.6 protein.
          Length = 227

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEAR---NR--IGGASVGGTIRNNPKRG 354
           DA + ++++ GV LDG+ M+  +  S     +PE R   NR    G  +   + N P+R 
Sbjct: 130 DADRLIQKFAGVALDGKVMHFAVIESSNFARKPEIRGTPNRRQSSGKPINRKVANPPRRQ 189

Query: 353 GGGIRNQXXXXXXXXXXXXXXXXXXGKRPVPTAEQLDAELDAYV 222
                                     ++P  TAEQLDAELDAY+
Sbjct: 190 NAA----------KPPVKKGKKPAREQKPPKTAEQLDAELDAYM 223


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLA-TSEINTLRPEARNRIGGASVGGTIRNNPKRGG 351
           D +KAM+++NG  L+G  +   LA   +    +P  R R G    GG   N+ +RGG
Sbjct: 422 DCLKAMEEWNGKELEGTVVEASLAKPPQEKKKKPVMRGR-GFGGAGGGAGNHGQRGG 477


>Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical
           protein R09B3.3 protein.
          Length = 85

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 521 ADAVKAMKQYNGVPLDGRAMNIQLATSEIN 432
           A A +A+ Q+NGV  +GRA+ + LA +  N
Sbjct: 56  AAAQRAVDQFNGVDFNGRALRVNLAQNRNN 85


>Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical
           protein R74.5b protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIG 399
           DA +A  ++NG  ++GR + + LAT  ++  + +    +G
Sbjct: 33  DADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVG 72


>Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical
           protein R74.5a protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIG 399
           DA +A  ++NG  ++GR + + LAT  ++  + +    +G
Sbjct: 151 DADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVG 190


>DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding
           protein ASD-1 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 518 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIG 399
           DA +A  ++NG  ++GR + + LAT  ++  + +    +G
Sbjct: 151 DADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVG 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,869,592
Number of Sequences: 27780
Number of extensions: 138618
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)