Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1034 + 8181373-8181484,8182810-8183384,8185410-8185468,818...    29   2.3  
08_01_0534 - 4635122-4635380,4635716-4635837                           28   4.0  
12_02_0694 + 22216756-22216980                                         27   9.1  
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    27   9.1  

>01_01_1034 +
           8181373-8181484,8182810-8183384,8185410-8185468,
           8185785-8185878
          Length = 279

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 157 ARLSGRES-SRRVTSVARPVQRPSDVAGRRRPSHRAHATSATCWGGRVAR 11
           ++L GRE  +RR   +A P +RP      RRP        A  WGG V R
Sbjct: 84  SKLHGREQRARRRPDLAAPRRRPGSREELRRPCDSVQ-LQAGGWGGGVGR 132


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  VAWARCDGRRRPATSLGLWTGRATDVTR 128
           V W  C GR    +++G WTG A + TR
Sbjct: 73  VKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>12_02_0694 + 22216756-22216980
          Length = 74

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 100 QRPSDV--AGRRRPSHRAHATSATCWGGRVARG 8
           +RP+ V  A    P  R     +  WGGR ARG
Sbjct: 24  RRPAAVSFAAAASPGSRGRVALSAAWGGRAARG 56


>02_01_0075 -
          522554-522616,522742-522748,523033-523136,
          523237-523368,525209-525401,525978-526330,
          526693-526791,526864-526935,527062-527213,
          527338-527386,527755-527885,528067-528307,
          528392-528565,528656-528797,529236-529282,
          529370-529450,530170-530271,530345-530440,
          531437-531444,531575-531616,531830-531894,
          534761-534853,534888-534959,535303-535509,
          536318-537226,537503-538158
          Length = 1429

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 77 TPPAVAPGPRDLSHMLGRSRCTRVP 3
          +PP  AP PR LS  L RSR    P
Sbjct: 10 SPPVAAPPPRRLSSPLPRSRAPPSP 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,076
Number of Sequences: 37544
Number of extensions: 243330
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)