Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0344 + 22540436-22540737,22541304-22543545                       27   6.9  
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364...    27   6.9  

>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 291 PKNNC*KRILINHNKTFIACSLCGHDKNKGLDKFVHSIK 407
           P N C  RI+I      +A S C H    GL   VH +K
Sbjct: 123 PSNRCHSRIIITTRIRSVARSCCSHPWPNGL---VHEVK 158


>03_01_0473 -
           3639533-3639598,3639848-3639955,3640037-3640126,
           3640203-3640394,3640952-3641018,3641472-3641512,
           3641762-3641779,3641984-3642055,3642154-3642237,
           3642296-3642373,3642703-3642759,3643374-3643469
          Length = 322

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 276 VARQQPKNNC*K--RILINHNKTFIACSLCGHDKNKGLDKFVHSIKH 410
           +A Q+ K  C K   IL+  +   IA S+C ++  K   K++H + H
Sbjct: 28  LAEQEVKALCEKAKEILMEESNVQIAHSMCTYNSAKTFSKYLHVLFH 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,824
Number of Sequences: 37544
Number of extensions: 161935
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)