Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical p...    27   6.2  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical
           protein C36B1.6 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 437 ILVNFMNAIMFN*MHKFIKTLVFVMTTERAGNECFIMIYQNSFLAIIFWLL 285
           +L+N    +MF      I   V V++T    NEC  ++Y  SF+   F+++
Sbjct: 85  VLLNIARMVMFG---GTILGCVLVISTFSRNNECDQLLYWTSFIFCAFFII 132


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -3

Query: 336 FYYDL-SKFFFSNYFLVVVWQRGLEIFSFSKLFYTILK*Y*HFLNILLISNFSPIPKIYV 160
           F YD+   +F +  F  + W     I S     Y  +  Y +F+N  +   FSP+ KI+ 
Sbjct: 159 FKYDIWMSYFRAKLFCYLSW-----IISIGFATYYWMYSYMYFVNATVDIQFSPVNKIFY 213

Query: 159 *NLNERICFLVLTILIISSLNLHC 88
               E    +   I I+SSL + C
Sbjct: 214 ----EVFTVVFCVIPIVSSLLVSC 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,300
Number of Sequences: 27780
Number of extensions: 188164
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)