Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0147 - 15099406-15099446,15100171-15100341,15101032-151011...    66   1e-11
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    28   5.2  
10_07_0196 + 13978647-13979142,13979242-13980542                       28   5.2  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    27   9.1  

>09_04_0147 -
           15099406-15099446,15100171-15100341,15101032-15101139,
           15101974-15102034,15102126-15102266
          Length = 173

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
 Frame = +2

Query: 158 GLKGSLVDALGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY-------ED 316
           G+ G LVDA G+PR DID+  V   R K+  L+NDHK +   IE+ +  ++       E 
Sbjct: 38  GITGGLVDAEGFPRSDIDIPAVLAQRRKLAELRNDHKDITNKIEKNLEVLHSTKLSRNEA 97

Query: 317 LIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFG 496
            I +       ++S L+     ++D     P FA I  +  GSPA   GL+  DE+V+FG
Sbjct: 98  SIPASSGTPASLHSGLSQNDPMEEDAVTRLP-FAIIDELTDGSPAAVDGLQLWDEIVKFG 156

Query: 497 SV 502
           +V
Sbjct: 157 NV 158


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 422 ISFVDKGSPAEEAGLRAHDELVQF 493
           +  V  GSPAE AG R  D +V+F
Sbjct: 384 VPMVTPGSPAEHAGFRPGDVVVEF 407


>10_07_0196 + 13978647-13979142,13979242-13980542
          Length = 598

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 290 RGIAKVYEDLIDSPGIDSEEINSCLNG-YPVFKKDETVNDPTFATISFVDKGSPAEE 457
           RGI   + D   SPGI+++   S  NG  P  +++ +V +P+ A ++   +G  + E
Sbjct: 264 RGIDSSWSDGAPSPGINAQTDESNANGRRPSLERNYSVIEPSDANLADEVEGESSPE 320


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 191 ILAHQLKNPSSQHCWTLIRRNDHESNVRF 105
           +  ++LK  S  HCWTL R++   S+  F
Sbjct: 359 VAPYKLKPLSDDHCWTLFRQSAILSSCTF 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,663
Number of Sequences: 37544
Number of extensions: 222114
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)