Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    54   1e-08
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   1.3  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    27   2.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   3.9  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   5.2  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   6.8  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   9.0  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 30/102 (29%), Positives = 49/102 (48%)
 Frame = +2

Query: 17  RYDVIPEIWEGHNIADYIDPDIFXXXXXXXXXXXXXXXGGMYAAPKIELDDTVREIRELA 196
           +YD +PE+ +G N+AD++DP+I                 G Y + +   D    E+ E A
Sbjct: 428 KYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSDQEIEDADEEEVLEKA 487

Query: 197 RQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLR 322
            +IR K  +    +R  K   +PV+PRT+  +T     S L+
Sbjct: 488 SRIREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSSLQ 529


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 233 ESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKL 340
           +S++   S KP +PRTS + +   S + LRK   +L
Sbjct: 147 QSKVTTASLKPNIPRTSMSSSPTASRTSLRKGAGEL 182


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 363 PLSDMSTPSFSMSFLSLEVDLCLVLAREVRGITGFVDCF 247
           PL   STP   +S LS ++DL    A +  G+T F D F
Sbjct: 144 PLEIYSTP---VSVLSSQIDLLRRFATDSDGLTPFTDVF 179


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 158 ELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMP 274
           +LD+   E+ ELA ++ +   ++   S L  QS   ++P
Sbjct: 147 DLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILP 185


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +2

Query: 191 LARQIRNKKA----ILKDESRLVKQSTKPVMPRTSRAKT---KQRSTSKLRKDMEKLGVD 349
           L +  ++KKA    +  D S+     TK   P+ S+ KT   +Q + S   +  EKL  D
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKST-PKKSKKKTSKAQQEANSTTAEGKEKLSGD 586

Query: 350 MSESGDA 370
            +E+G++
Sbjct: 587 STETGNS 593


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 248 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSESG 364
           ++S KP           + STS   KD+E+L  +++ESG
Sbjct: 125 RKSNKPGEIFVGATLQNESSTSTEHKDIEQLETEINESG 163


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 444 PPTSRWPTPSCA*K*RGWP 500
           P    W  P C  K RGWP
Sbjct: 725 PKDHLWLNPDCGLKTRGWP 743


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 131 GGMYAAPKIE-LDDTVREIRELARQIRNKKAILKDESRL 244
           G +   PK + L  T+RE  + A  I+N+K  L D +RL
Sbjct: 59  GSLTPHPKEDALYSTIREEYQKAINIQNEKVQLADRARL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,802
Number of Sequences: 5004
Number of extensions: 21375
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)