Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    29   0.56 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.8  

>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 110 ANNKIRDTILFNNLTNSKKPRGTKNTNKSLWGHSFK 3
           +N KI DT+LFN+ ++ +KP+  K    +L G + K
Sbjct: 192 SNAKITDTMLFNHFSSIQKPK-LKAEGSTLKGQALK 226


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 252  NRDKMITNFDKLCADLERQELETPNGIASPSTYAQLLAIYLYQNDLCNAKFLWKR 416
            + +K +       AD ERQ L +PN   S   +   +A +L  N+L  A+ + KR
Sbjct: 1414 DEEKDLDEIPSTAADFERQLLSSPN---SSLLWISYMAYHLNLNELQEAREVGKR 1465


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 213 KYQFVLILVLHDSNRDKMITNFDKLCADLERQELETPNGIASPSTYAQLL 362
           KY   +  V  +++  K+I++    C+D+    +E  N + SP +Y +L+
Sbjct: 847 KYSTCIYDVTDENSHLKLISSLQDECSDVLYLLMEFLNMVCSPKSYYKLI 896


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 483  TVSVQ*PILQLFQGSYSLH 427
            T+SV   IL+LF+G Y+LH
Sbjct: 1219 TLSVLDQILKLFKGRYTLH 1237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,110
Number of Sequences: 5004
Number of extensions: 38775
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)