Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0957 - 21238240-21238343,21238467-21238648,21238760-212388...    69   2e-12
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    27   6.9  
04_04_1145 + 31239317-31239784,31245773-31245916,31246635-312468...    27   6.9  
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    27   9.1  

>04_03_0957 -
           21238240-21238343,21238467-21238648,21238760-21238836,
           21238928-21239011
          Length = 148

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +3

Query: 231 ILVLHDSNRDKMITNFDKLCADLERQELETPNGIASPS-TYAQLLAIYLYQNDLCNAKFL 407
           +  +H +   K  ++   LC DL  Q      G A+    YA  L  +LY NDL +A+FL
Sbjct: 3   LAAVHAALAGKSYSSVAPLCDDLFLQAAS--RGAATDGWPYAVHLLAHLYLNDLNSARFL 60

Query: 408 WKRIPQNVMSSSPEIVAIWAIGQKLWKKDLPGTYEA 515
           WK  PQ    + PE+ A+W IGQ LW +D  G Y A
Sbjct: 61  WKSTPQEAKDARPELAAVWRIGQCLWNRDYAGVYAA 96


>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 240 LHDSNRDK---MITNFDKLCADLERQELETPN 326
           LHD +R++    +  ++  CAD  RQ+L  PN
Sbjct: 220 LHDPSRNRGFLFVEYYNHACADYARQKLSAPN 251


>04_04_1145 +
           31239317-31239784,31245773-31245916,31246635-31246875,
           31247213-31247713,31247851-31248263
          Length = 588

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 97  LEIQYYSITSQIPKNQEVPKIQTKVCGA 14
           +E  YY   +Q PK Q   ++  K+CG+
Sbjct: 168 VEFSYYGAPAQTPKEQMFSELVDKLCGS 195


>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 95  RDTILFNNLTNSKKPRGTKNTNKSLWG 15
           RDT LFN   N     G KNTN   +G
Sbjct: 698 RDTGLFNESGNDDNESGYKNTNTDEYG 724


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,003
Number of Sequences: 37544
Number of extensions: 208164
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)