Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320A05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.10
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 2.2
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 26 3.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 3.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 3.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.8
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 6.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.0
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 25 9.0
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.10
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 78 IDGGEEHTLERREVENLVLDIKELKDVVPEEYLSHKE--RYENSIRKACILYEFFRKYSE 251
I+ + ++RE+EN+ K K + PEEY+ + + ++ + C L EF +SE
Sbjct: 340 IEDRQREEAKQREIENVQWKPKYFKMIAPEEYILNFDIPNGKSDLEVLCALDEFIPIFSE 399
Query: 252 TN 257
+
Sbjct: 400 VD 401
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 162 GQHLLAL*CQVPNFPLLSSP 103
G+ ++AL C+ P+ PLL+SP
Sbjct: 365 GEKVMALFCEFPSNPLLNSP 384
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 60 QELVHFIDGGEEHTLERREVENLVLDIKELK 152
Q+L+ FID H + EVE ++ EL+
Sbjct: 4 QQLIDFIDSRTRHPYKSDEVEKFQQEVNELQ 34
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 37 GRSVRLMYKNWCILLMEEKSILWRGEKWKIW 129
G +Y CI+ EEK I GE +IW
Sbjct: 1184 GSGTSTLYNEICIVHPEEKYICQEGEIGEIW 1214
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 27 VRERQKCS-FDVQELVHFI----DGGEEHTLERREVENLVLDIKELKDVVPEEYLSHKER 191
V +RQ CS V E+ + D G EH RR ++ L + P++ H R
Sbjct: 466 VAKRQTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPR 525
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 315 KDI-SPFMLHMGMFVPTIMNQSAPDQVAEWLPK 410
+DI +P L + VPT + P Q+A+W K
Sbjct: 514 RDIFTPLFLGASLIVPTAEDIGTPGQLAQWANK 546
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.2
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Frame = +3
Query: 117 VENLVLDIKELKDVVPE----EYLSHKERYENSIRKACILYEFFRKYSETNNTLDAFSPT 284
V NL+ D +EL + PE + LS + ++ RK +L E F+ TL AF
Sbjct: 3469 VSNLITDARELMKLTPETINDDNLSEIKHLKS--RKHLLLTETFK-------TLKAFG-- 3517
Query: 285 NKYRVQMGVFKDISPFMLHMGMFVPTI-MNQSAPDQVAEWLPKALNLEIIGTYAQTELGH 461
+YRV+ G+ +++S + ++ +PT + + ++V L K +L+ I + QT GH
Sbjct: 3518 LQYRVKAGIEENLSN-LRNLLAVIPTFPVTSLSIEKVDRSLMK--SLDFIPKF-QTLAGH 3573
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 84 GGEEHTLERREVENLVLDIKELKDVVPEEYLSHKERYENSIRKACILYEFFRKYSETNNT 263
GGEE L++ EV + + D++PEE + E E + E + E
Sbjct: 922 GGEEF-LKQFEVTDYKAEDLNWDDIIPEEEMERIEEEERMLAAQRAKEEERERREEEERE 980
Query: 264 LDAFSPTNKYR 296
D P+ Y+
Sbjct: 981 NDEDHPSRTYK 991
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 255 NNTLDAFSPTNKYRVQMGVFKDISPFM---LHMGMFVP 359
NNT DAF KY ++ + P + LH+G+ P
Sbjct: 231 NNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHVGIQFP 268
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 186 ERYENSIRKACILYEFFRKYSETN 257
E Y N I + FF KYS+TN
Sbjct: 120 EEYGNQINQQETFIRFFFKYSKTN 143
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 408 KALNLEIIGTYAQTELGHGTFLRGLETTATYDPKT 512
K +N + TYA T + RGL T + DPKT
Sbjct: 16 KCINNSLRSTYAITGVN---LTRGLATNSKVDPKT 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,544
Number of Sequences: 5004
Number of extensions: 51090
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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