Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320A05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 91 4e-19
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 52 2e-07
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 46 2e-05
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 34 0.060
05_01_0321 + 2535201-2535260,2535366-2535700,2535705-2535849,253... 31 0.56
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 29 2.3
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 29 3.0
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 28 5.2
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 28 5.2
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 27 6.9
06_03_1238 - 28604921-28605385,28605810-28606055 27 6.9
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 9.1
01_06_0889 - 32741326-32741571,32741671-32741812,32741908-327422... 27 9.1
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 91.5 bits (217), Expect = 4e-19
Identities = 63/168 (37%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Frame = +3
Query: 24 LVRERQKCSFDVQELVHFIDGGEEHTLE--RREVENLVLDIKELKDVVPEEYLSHKERYE 197
L ER FDV+ + G H ++ R + D KD L KE ++
Sbjct: 12 LAGERATAQFDVEHM-KVAWAGSRHAVDVADRMARLVASDPVFRKD--NRTMLPRKELFK 68
Query: 198 NSIRKACILYEFFRKYSETNNTLDAFSPTNKYRVQMGVFKDISPFMLHMGMFVPTIMNQS 377
+++RKA +++ E T + + Y Q G + D LH GMFVP I Q
Sbjct: 69 DTLRKAA---HAWKRIVELRLTEEEANLLRLYVDQPG-YVD-----LHWGMFVPAIKGQG 119
Query: 378 APDQVAEWLPKALNLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEF 521
+Q +WLP A +IIG YAQTELGHG+ ++GLETTAT+DPKT+EF
Sbjct: 120 TEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPKTDEF 167
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 396 EWLPKALNLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEF 521
+WL N I G ++ TELGHG+ +RG+ET ATYD KT EF
Sbjct: 180 KWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKTREF 221
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 417 NLEIIGTYAQTELGHGTFLRGLETTATYDPKTEEF 521
NL+ G +A TEL HG+ ++ L+TTAT+DP T+EF
Sbjct: 182 NLDYPGCFAMTELHHGSNVQALQTTATFDPVTDEF 216
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 34.3 bits (75), Expect = 0.060
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 333 MLHMGMFVPTIMNQSAPDQVAEWLPKALNLEIIGTYAQTELGHGTFLRGLETTATYDP 506
++H + + TI + Q ++LP L +G +A TE HG+ L TTAT P
Sbjct: 132 LVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSDASSLITTATKVP 189
>05_01_0321 +
2535201-2535260,2535366-2535700,2535705-2535849,
2535946-2536140,2536243-2536530,2536849-2537035,
2537260-2537306,2537704-2537796
Length = 449
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/83 (18%), Positives = 40/83 (48%)
Frame = +3
Query: 15 NPDLVRERQKCSFDVQELVHFIDGGEEHTLERREVENLVLDIKELKDVVPEEYLSHKERY 194
NP ++ ++C+ + + + + G + E LD + DVV + Y+ +++
Sbjct: 264 NPMMIHATERCAAGIMQAIGHFNLGPNVSPRDLEFPYPKLDAIKPADVVVKFYVLYEKWR 323
Query: 195 ENSIRKACILYEFFRKYSETNNT 263
+ ++KA + ++ ++ + N T
Sbjct: 324 QGEVQKAPFIIQYLKRITHPNGT 346
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 24 LVRERQKCSFDVQELVHFIDGGEEHTLERREVENLVLDIKELKDVVPEEYLSHK 185
+ + RQ+ QEL+H I ++R EVE+ +K L++++P +++S K
Sbjct: 511 IYQSRQRTVMTKQELIHKIIASNPKIVDRGEVED---QLKLLEEIIP-DWISEK 560
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 340 CNINGEMSLNTPICTRYLFVGLNASKVL 257
C I M N PIC YLF L + VL
Sbjct: 124 CCIENSMKNNCPICYEYLFDSLRETSVL 151
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 18 PDLVRERQKCSFDVQELVHFIDGGEEHTLERREVENL--VLDIKELK 152
P +VRE +K F+ +V GGEE RR + L +L I E+K
Sbjct: 503 PSVVREAKKRIFERLSIVSSTVGGEEEREARRSMGTLGEMLTIPEVK 549
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 27.9 bits (59), Expect = 5.2
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +3
Query: 9 SVNPDLVRERQKCSFDVQELVHFIDGGEEHTLERREVENLVLDIK-ELKDVVPEEYLSHK 185
+++ D K ELV ++ TL+RRE N LD+K ++ H+
Sbjct: 49 NISDDNTESEAKVQKIQDELVSLNAQLKQITLQRREALNNYLDLKGNIRVFCRIRPFHHE 108
Query: 186 ERYENSIRKACILYEFFRKYSETNNTLDAFSPT-NKYRVQMGVFKDISP 329
E Y + F K +ET F +++ Q VF ++ P
Sbjct: 109 ESYSSRNLFTLDESNVFLKVAETKRKQYKFDKVFDQFSTQGDVFSEVEP 157
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 449 RLSISSNNLQIEGLRQPLGDLVRSALVHDGRYEHSHVQHKWGNVFKHS 306
RLSI ++ ++E QP + SA V DG + HV+ ++F+H+
Sbjct: 444 RLSIQGDDDRLENAEQPRKNTAASAGVDDGILDLEHVRSL--SMFQHT 489
>06_03_1238 - 28604921-28605385,28605810-28606055
Length = 236
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -3
Query: 258 YSFQNIS*RTRRVCTPSVSNSRNAPCGSDTPQGQHL-LAL*C---QVPNFPLLSSPKYAL 91
+ FQ+ + T+ + +SN +N+P S+T Q HL C QVP +L K A
Sbjct: 105 HRFQSRTGETQEMMQGPLSNLKNSPSTSETTQSAHLGSTQHCAPEQVPEHSILQEYKPAT 164
Query: 90 LLH 82
L+
Sbjct: 165 CLN 167
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 334 INGEMSLNTPICTRYLFVGLNASKVL 257
+ M N PIC YLF L ++VL
Sbjct: 156 VENSMRQNCPICYEYLFDSLKGTRVL 181
>01_06_0889 -
32741326-32741571,32741671-32741812,32741908-32742218,
32742317-32742446,32742543-32742773,32742918-32742976,
32743077-32743300,32743508-32743559
Length = 464
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 353 RTDHHEPERSGPGRRVAAEGPQSGDYW 433
R+ H + R G G +VAA+G + YW
Sbjct: 275 RSVHRQRYRMGVGYKVAADGNATEQYW 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,385
Number of Sequences: 37544
Number of extensions: 331985
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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