Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    36   0.013
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    29   2.7  
DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.      27   6.2  
DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-couple...    27   6.2  
AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF026211-1|AAB71293.2|  600|Caenorhabditis elegans Sodium:neurot...    27   6.2  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   8.1  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    27   8.1  

>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -1

Query: 182 SVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYAFIFLLYTLYALNVYFNKE 21
           ++N   A+FL   +K+ +S    +     S I+S AF+ +L+ +Y   +Y+NKE
Sbjct: 98  TINRFCAVFLPIAYKTLLSSTRTKVIIAFSFILSLAFLTILFQIYPCQMYYNKE 151


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -1

Query: 251 IFCVTITYFVIVKALKCLRFVKNSVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYAF 72
           I C+ +    I++ L  + F++ S        LFNQ      K SD+ T  M  I    F
Sbjct: 3   ISCLLLLMLWILRFLTAVAFLETSNTETLLQQLFNQTYDVDMKPSDDLT--MVTITPNTF 60

Query: 71  IFLLYTLYALNVYFNKEYLLK 9
           I L        + +++E+LL+
Sbjct: 61  ILLSMDQTQETIQYSEEFLLR 81


>DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 294 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 380
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-coupled
           betaine transporterprotein protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 294 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 380
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical
           protein W10G11.19 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 197 RFVKNSVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYAFIFLLYTLY 48
           +FV NS    ++  +F QH  KI +    + S  S +I     F L T +
Sbjct: 43  KFVANSNRFWTSNLVFQQHNEKIDRVQISSESWKSAVIEEPVTFPLDTFF 92


>AF026211-1|AAB71293.2|  600|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 3
           protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 294 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 380
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 288 GNIKFIIISYFCGYIKFHIFFSF 356
           GN+KF+++SYF G   F     F
Sbjct: 54  GNLKFLLVSYFIGTFLFASIICF 76


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
          receptor, class v protein21 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 99 YERYYFLCIYFFAIYFIRFKCLL 31
          Y  YYFLCI    +Y +   C+L
Sbjct: 23 YLIYYFLCIAILPVYILIVACIL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,514,772
Number of Sequences: 27780
Number of extensions: 195431
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)