Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320A03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 49 2e-06
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 46 2e-05
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 44 7e-05
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 44 1e-04
11_01_0136 + 1135170-1135406,1135854-1136240 29 3.0
04_04_1359 - 32886181-32886789 28 4.0
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 28 5.2
07_03_0523 + 19030078-19031109 28 5.2
05_01_0277 + 2152679-2153038 28 5.2
07_03_1509 - 27246721-27247350 27 6.9
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 27 6.9
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 27 9.1
01_01_0779 - 6030245-6031780 27 9.1
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 49.2 bits (112), Expect = 2e-06
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 204 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
DK++A Y+W+ G+G +R K RT++ E P +LP WNY
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNY 854
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAY 498
I++DPFR GN++LVMCDTY + +P TN R + + +
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVF 913
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 204 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
+K++A Y+WI GSG +R K RTL+ P LP WNY
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNY 55
Score = 44.8 bits (101), Expect = 4e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHR 477
I++DPFR+GN++LVMCD Y + +P TN R
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKR 107
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 44.0 bits (99), Expect = 7e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHR 477
I+RDPFR+G ++LVMCD Y + +P TN+R
Sbjct: 104 IFRDPFRKGKNILVMCDCYAPNGEPIPTNNR 134
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHR 477
I++DPFRRG+++LVMCD Y +P TN R
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKR 107
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 204 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
DK++A Y+W+ GSG +R K RT+ LP WNY
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNY 55
>11_01_0136 + 1135170-1135406,1135854-1136240
Length = 207
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +2
Query: 119 IGSGAK--ELSKCIPLEDTVGPVQRSTAAGRQGPRHIRMDRRLRRACSLQRQDFELHSRD 292
I S A+ + +K IP+ + P + GR+ R + M L+R CS + E +
Sbjct: 82 IASSARVHQFTKSIPIPNKATPSEEEELKGREEDRCVAMTNELKR-CSKEATPSEEKAAK 140
Query: 293 S*RPADMELRRQLYRPDDKHELRHAPXSPRP 385
+ + ++++ H L P +P P
Sbjct: 141 KMKKEEAVKKKRMPMERVHHLLSMVPRAPVP 171
>04_04_1359 - 32886181-32886789
Length = 202
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 275 ELHSRDS*RPADMELRRQ--LYRPDDKHELRHAPXSPRPYTGTRSGAETTCLS 427
+L R PA +EL R LY H L H+P SP Y + + ++ S
Sbjct: 72 KLQERRRAAPARLELARPQPLYYSHHHHRLMHSPVSPMDYAYVMASSSSSSSS 124
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 189 LPLPEDKVL-ATYVWIDGSGEHVRCK 263
+PL E VL VWID SG+H RC+
Sbjct: 397 IPLSEQDVLFVRVVWIDTSGQH-RCR 421
>07_03_0523 + 19030078-19031109
Length = 343
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 381 GHIQGPVPARKPRACHVRH 437
G +QGPVPAR+P A ++H
Sbjct: 304 GRVQGPVPARRP-ALRLKH 321
>05_01_0277 + 2152679-2153038
Length = 119
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 344 DKHELRHAPXSPRPYTGTRSGAETTCLSCATHTITA 451
D+H RH PR ++ + S A T S ++ T TA
Sbjct: 31 DEHHHRHRAKKPRRHSSSSSAAGTPSSSSSSSTTTA 66
>07_03_1509 - 27246721-27247350
Length = 209
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 24 LVLPIINNKR*LSGARKMSETQNKVQDNPKILSGPVLKNSPNAFLSKTLLDRYRDLPLPE 203
+V PI N R SG + V P PVL + P+A L YR PLP
Sbjct: 1 MVPPIAGNGRAKSGRLPLPPATIPVAVPPS----PVLGSLPSAIKCNPLAPFYRFSPLPR 56
Query: 204 DKVLATYV 227
V+++++
Sbjct: 57 SPVVSSHL 64
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 453 HAVIVCVAHDKHVVSAPERVPVY 385
HA C +HD VVS P+ +PV+
Sbjct: 592 HADEPCASHDDKVVSEPDPLPVH 614
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 302 PADMELRRQLYRPDDK-HELRHAPXSPRPYTGTR--SGAETTCLSCATHTITACNQQRQT 472
P D +L+ L P K + AP + P G S A TTC + T A NQ+R+
Sbjct: 291 PRDEQLQITLPPPPQKVTKTVLAPATGEPSRGATLSSSAATTCCTFLTSPAKATNQEREA 350
Query: 473 TVLS 484
S
Sbjct: 351 RASS 354
>01_01_0779 - 6030245-6031780
Length = 511
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 ARQSKN-FIGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRH 220
ARQS+ +G G E +++TV + +TAAG P H
Sbjct: 261 ARQSRQRMLGGGEPECLLDYLMQETVREIDEATAAGLPPPPH 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,241
Number of Sequences: 37544
Number of extensions: 307405
Number of successful extensions: 895
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -