Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320A03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 65 3e-11
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 62 3e-10
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 60 9e-10
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 56 1e-08
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 56 1e-08
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 49 2e-06
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 31 0.38
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 6.2
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 27 8.1
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 27 8.1
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 27 8.1
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 156 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
L + +D + LP K ATYVWIDG+GEH+R K RT+N P+ + PIWNY
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNY 66
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHE 519
++ DPF G +VLVMCDT D+ M+PT TNHR C E + D +
Sbjct: 88 VFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQQ 132
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +3
Query: 156 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
L + +D + LP K ATYVWIDG+GE +R K RT N P+ + PIWNY
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNY 66
Score = 52.0 bits (119), Expect = 2e-07
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDH 516
++ DPF +G++VLVMC+T D +M+PT TNHR C + +H
Sbjct: 88 VFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 60.1 bits (139), Expect = 9e-10
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +3
Query: 156 LSKTLLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
L ++D++ L K+ ATYVWIDG+GE++R K RT + +P+ +D PIWNY
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNY 66
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = +1
Query: 388 YRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRD 513
Y DPF G + LVMCDT D+ MQPT T+HR C E RD
Sbjct: 89 YPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRD 130
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 56.4 bits (130), Expect = 1e-08
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRD 513
IY DPFR+G + LVMC+TYD +PT TN+R +C+E ++ D
Sbjct: 86 IYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAAD 128
Score = 54.8 bits (126), Expect = 4e-08
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 216 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
A Y+WIDGSGE++R K RT ++ P P+ LPIWN+
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNF 64
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 56.4 bits (130), Expect = 1e-08
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRD 513
IY DPFR+G + LVMC+TYD +PT TN+R +C+E ++ D
Sbjct: 89 IYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAAD 131
Score = 54.8 bits (126), Expect = 4e-08
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 216 ATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
A Y+WIDGSGE++R K RT ++ P P+ LPIWN+
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNF 67
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 49.2 bits (112), Expect = 2e-06
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = +3
Query: 222 YVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNY 320
Y+WID + E++R K +T ++ P+TP DLPIWN+
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNF 67
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 385 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRDHE 519
+YRDPFR G + + +C+T + +P TN R +C + ++ +D E
Sbjct: 89 LYRDPFRPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQE 133
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 31.5 bits (68), Expect = 0.38
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 248 ACSLQRQDFELHSRDS*RPADMELRRQLYRPDDKHELRHAPXSPRPYTGTRSGAETTCLS 427
AC + + D E H S + LR+QLY+ ++ EL + P C++
Sbjct: 204 ACKIMK-DMEYHHFLS---STYSLRQQLYKLRERLELEYFEARVNPERLEHMEC-AGCIT 258
Query: 428 CATHTITAC--NQQRQTTVLSAKK 493
CA H + AC N QR + A K
Sbjct: 259 CAEHLLGACMPNMQRDVYQIHANK 282
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 389 TGTRSGAETTCLSCATHTITACNQQR--QTTVLSAKKRTTAAETTS 520
TG+ S TT ++ +T +++ QTT ++ +K TT ETT+
Sbjct: 780 TGSDSSETTTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTT 825
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 515 WSLQRSYASWH-LIRWFVFVGCML*SYVSHMTSTWFPRRNGSLYMAW 378
+SL+ + W+ + W +F M+ S+ + +WF R+G +++W
Sbjct: 293 FSLEEGASFWNQALTWRMFFSAMISSFTVNWILSWFNGRSG--WLSW 337
>Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical
protein ZK945.5 protein.
Length = 250
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 468 CLCWLHAVIVCVAHDKHVVSAPE 400
C W+H++ H+K ++S P+
Sbjct: 129 CWTWIHSISTLAHHEKKMISTPD 151
>U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical
protein C06G1.2 protein.
Length = 182
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 395 TRSGAETTCLSCATHTITACNQQRQTTVLSAKKRTTAAETTS 520
T + ETT + AT T+ + +TT + + TT E T+
Sbjct: 62 TTTEVETTPTTEATTTVAETTTEAETTTTTVESTTTTTEATT 103
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 66 ARKMSETQNKVQDNPKILSGPVLKNSPNAFLSKTLLDRYRDLPLPEDKVLATYVWIDGSG 245
+ K+ E + + K + +K+ S ++ RDL LP+ + L+ + W +G
Sbjct: 29 SEKLDEIGSAHLADTKSRTKSAVKHELTGIGSSSIYKGTRDLQLPKSEDLSNFGWNEGVL 88
Query: 246 EHVR 257
EH++
Sbjct: 89 EHLQ 92
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 515 WSLQRSYASWH-LIRWFVFVGCML*SYVSHMTSTWFPRRNGSLYMAW 378
+SL+ + W+ + W +F M+ S+ + +WF R+G +++W
Sbjct: 293 FSLEEGASFWNQALTWRMFFSAMISSFTVNWILSWFNGRSG--WLSW 337
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 515 WSLQRSYASWH-LIRWFVFVGCML*SYVSHMTSTWFPRRNGSLYMAW 378
+SL+ + W+ + W +F M+ S+ + +WF R+G +++W
Sbjct: 293 FSLEEGASFWNQALTWRMFFSAMISSFTVNWILSWFNGRSG--WLSW 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,114
Number of Sequences: 27780
Number of extensions: 257273
Number of successful extensions: 768
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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