Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    48   8e-07
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    33   0.026
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.56 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   5.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   6.8  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.8  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   9.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   9.0  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   9.0  

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 21/44 (47%), Positives = 31/44 (70%)
 Frame = +2

Query: 389 GAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTL 520
           GA + L I+ +I  SDLE DY+N  + C+KLN  ++P+ I+HTL
Sbjct: 21  GANMLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTL 64


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +2

Query: 362 LFSLCLIDTGAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPK 502
           ++   L+ T A + L +Y+ +  SDL+ D++N  +   KLN++++P+
Sbjct: 6   IYFTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPE 52


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 113 ELEYVCAIESMSRFGDYGYI-TPMNQWFLKL 202
           EL  VC  E  + + DYGYI TP   W ++L
Sbjct: 122 ELLKVCLDEMSASYIDYGYITTPQLHWLVRL 152


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/85 (18%), Positives = 40/85 (47%)
 Frame = -1

Query: 452 GNHTLNQTMLLCNKLIEIIQHQCQLNTERKVLFRLISSRRNTS*FNIDLAIHHTINCSYT 273
           G HT+  ++L+ N  I  ++   ++ + RK  +   ++ R      +       +N  Y 
Sbjct: 64  GGHTVITSILIANNGIAAVK---EIRSIRKWAYETFNNERAIKFTVMATPDDLKVNADYI 120

Query: 272 KLSPE*CTKITQNNNNYYSNTKILI 198
           +++ +       +NNN Y+N ++++
Sbjct: 121 RMADQYVEVPGGSNNNNYANVELIV 145


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 147 LMDSIAQTYSNSNYLPSLVDY--NNVGSRYG 61
           L+  I  TYS ++Y+P+ V +  N+ G  +G
Sbjct: 651 LLGFIQNTYSTTSYIPTRVSFNPNDTGGSFG 681


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 159 SPKRLMDSIAQTYSNSNYLPSLVDYNNVGSRYGIKSRVGRNVAISRYL 16
           S ++ + ++AQ +  SN +  L+       ++G +S  G+N + SRYL
Sbjct: 793 SMEQTIVNLAQNFVGSNNINLLMP----NGQFGTRSEGGKNASASRYL 836


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 491 TSNSVYHSILGHLGNHTLNQTMLLC---NKLIEIIQHQCQLNTER 366
           TS SV  S+LG + NH   + +L     +K+ + I H  +L  ++
Sbjct: 182 TSRSVLSSLLGEMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKK 226


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 126 TYSNSNYLPSLVDYNNVGSRYGIKSRVGRNVAI 28
           TYS++   P + DY   G  + ++S + R+  I
Sbjct: 487 TYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI 519


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 337 RDDISRNSTFLSVFN 381
           +DD S+N+TFLS F+
Sbjct: 81  KDDASKNNTFLSTFD 95


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 274 QNYHRSNVLKLHKIIITTTVTQK 206
           +N H S+VLK HK IIT+    K
Sbjct: 207 RNNHCSHVLKGHKDIITSLAISK 229


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 329  YFCVMILAETVLFSLCLIDTGAVLFLLIYYIITLSDLECDYLN 457
            Y     LA+TVL  LC+I      F +I  +    +L+ D  N
Sbjct: 1698 YLEAWCLAKTVLSMLCIIAIQRFFFKIIQVLFLTRELKHDGTN 1740


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 VLFSLCLIDTGAVLFLLIYYIITLSDLECDYLNAQECC 472
           VL++ CL   G +L  L+YY +T S      L  +E C
Sbjct: 6   VLYT-CL--AGFILLFLVYYYLTHSHCPRKQLEGEETC 40


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 251 TKITQNNNNYYSNTKILILETTDSLE 174
           T++ ++N NYY  T + +L  T   +
Sbjct: 235 TEVDKSNKNYYGETNLYLLGITGQFD 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,967
Number of Sequences: 5004
Number of extensions: 39243
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)