Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0261 + 1926458-1926523,1926959-1927144                           37   0.011
12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994     28   5.2  
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612...    27   9.1  

>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 13/39 (33%), Positives = 28/39 (71%)
 Frame = +2

Query: 392 AVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYI 508
           A++ L+IY ++ L+DLE DY+N  +   ++N  ++P+++
Sbjct: 14  ALIVLVIYQLMCLADLEFDYINPFDSSSRINKVVIPEFV 52


>12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994
          Length = 196

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 368 SLCLIDTGAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWL 493
           SLC   T  ++  ++  I+T++D  CD    Q+C  KL+Y+L
Sbjct: 3   SLC--GTMIIILAMLPAILTMADPYCDCDCPQQCEVKLHYYL 42


>01_06_1308 -
           36159406-36159536,36159642-36160616,36161117-36161245,
           36161403-36161647,36161730-36161881,36161982-36162083
          Length = 577

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 269 LSPE*CTKITQNNNNYYSNTKILILETTDSLELCIHN 159
           LSP   T    NN N  + TK+L+L    S+EL + +
Sbjct: 433 LSPFNYTGTPPNNTNVKTGTKLLVLRYNTSVELVMQD 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,433
Number of Sequences: 37544
Number of extensions: 199927
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)