Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...    44   5e-05
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 365 FSLCLIDTGAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAH 514
           + L LI  G  +F  IY +I + +L  DY N  E C  LN  ++P+YI H
Sbjct: 10  YLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIH 59


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 335 CVMILAETVLFSLCLIDTGAVLFLLIYYII 424
           CV +L   ++F  C  + G V F + Y+II
Sbjct: 67  CVTLLKNNMVFIECFFNHGGVYFFVPYFII 96


>Z81110-9|CAB03261.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 395 QHQCQLNTERKVLFRLISSRRNTS*FNIDLAIHHTINCSYTKLSPE*CTKITQNNNNYYS 216
           +H  +L      L  LISSRR  S   ID  +    +CSY    P  C +  +N+N+ + 
Sbjct: 94  KHHFRLKEPIHALRLLISSRRELS--VIDAQVQ---SCSYPPAPPSECHRAARNHNHRHG 148

Query: 215 NT 210
            +
Sbjct: 149 KS 150


>Z81094-8|CAB03155.2|  353|Caenorhabditis elegans Hypothetical
           protein T01D3.1 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 395 QHQCQLNTERKVLFRLISSRRNTS*FNIDLAIHHTINCSYTKLSPE*CTKITQNNNNYYS 216
           +H  +L      L  LISSRR  S   ID  +    +CSY    P  C +  +N+N+ + 
Sbjct: 94  KHHFRLKEPIHALRLLISSRRELS--VIDAQVQ---SCSYPPAPPSECHRAARNHNHRHG 148

Query: 215 NT 210
            +
Sbjct: 149 KS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,376,161
Number of Sequences: 27780
Number of extensions: 214424
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)