Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   3.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   5.2  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   9.0  

>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 462 PSRSARRWWLNVRGRACGRRSPGS-VSRRLTRNPDPTIWSTE 340
           P  + +  W++  GR      PG  ++ R++R P PT+ STE
Sbjct: 334 PQDAQQSSWISFDGRNRTELLPGDYLTVRISRYPFPTVHSTE 375


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = +3

Query: 192 PQRAHPRQR--AGLNPPPRYMYRMESMAREGVVSHCT*GGGSGAYFNESGSTPYSK*WGP 365
           PQ++ PRQ+  A   P P    R       G+ +        G   N +  T  S   G 
Sbjct: 91  PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLKNLLEKAMHPGHKSNANSPTSESPSKGF 150

Query: 366 GFW*GAETLTRGSASHTRGPGH*ATSDAHSSR 461
           G +     L + ++SH   P +  +SD H S+
Sbjct: 151 GSFINNHILHKNTSSHPSSPVNGKSSDIHKSQ 182


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 471 PGPPSRSARRWWLNVRGRACGRRSPGSVSRRLTRNPDPTIWSTE*SLIH*NMRRSRPPTC 292
           PG P R +    LNV        + G  +  + +  +  +W T  SL+H N R  +    
Sbjct: 525 PGTPVRDSLNSVLNVGAT----NAAGVSTENVEQEVETPVWETFSSLLHANARTKKKELL 580

Query: 291 NV 286
           N+
Sbjct: 581 NI 582


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  YFILLFITFTCKFINCLNSFQY 81
           YFI  F+TF  +   C  +F+Y
Sbjct: 162 YFINYFVTFPLELTTCAITFRY 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,638
Number of Sequences: 5004
Number of extensions: 33684
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)