Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    28   3.5  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   6.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   6.2  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    27   6.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    27   8.1  

>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -2

Query: 430 CPGPRVWEALPRVSVSAPHQKPGPHYLEYGVEPDSLKYAPEPPPYVQCETTPSLAMDSIR 251
           CP P +   LP V   AP   P P         D+LK  PEPP  ++      L +D  R
Sbjct: 317 CPSPPL---LPPVCPPAPPPPPPPIGGLTSPPKDALKNVPEPPGNMKTLNWQRLTLDKTR 373


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 476 GYRAPPRGVRVAGGSMSGAARVGGAPPGQC 387
           G RAPP+GV + G   +G   +G     QC
Sbjct: 344 GIRAPPKGVLLFGPPGTGKTMIGRCVASQC 373


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 400  PRVSVSAPHQKP-GPHYLEYG-VEPDSLKYAPEPPPYVQCETTPSLAMDSIRY 248
            P  S ++P   P  P Y   G   P S KY+P  P Y    T+PS +  S +Y
Sbjct: 1694 PTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY--SPTSPSYSPTSPQY 1744


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 400  PRVSVSAPHQKP-GPHYLEYG-VEPDSLKYAPEPPPYVQCETTPSLAMDSIRY 248
            P  S ++P   P  P Y   G   P S KY+P  P Y    T+PS +  S +Y
Sbjct: 1701 PTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY--SPTSPSYSPTSPQY 1751


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 427 PGPRVWEALPRVSVSAPHQKPGPHYLEYGVEPDSLKYA 314
           P PRV E  PR + +AP+ K  P ++  G   D  + A
Sbjct: 557 PSPRVIEDEPRNAPNAPNPKEPPRFVHSGDYSDIAQQA 594


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 400 PRVSVSAPHQKPGPHYLEYGVEPDSLKYAPEPPPYVQ 290
           P+     P  KP P Y+E   +P      P P PY Q
Sbjct: 24  PQPPPPPPPPKPAP-YVEQSAQPQQTAPPPPPAPYPQ 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,443
Number of Sequences: 27780
Number of extensions: 238815
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)