Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319H04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 171 3e-43
07_01_0578 + 4295386-4296489,4297394-4297507 169 1e-42
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.080
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.32
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.56
03_05_0366 - 23505755-23506441 31 0.56
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.3
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 1.3
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 3.0
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 3.0
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.0
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 4.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 5.2
05_04_0292 + 19893895-19894983 28 5.2
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 5.2
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 5.2
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 6.9
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 6.9
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 6.9
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 6.9
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 27 6.9
02_03_0152 - 15767985-15768317 27 9.1
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 171 bits (416), Expect = 3e-43
Identities = 85/149 (57%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 77 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 254 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 433
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 434 XXXXXXXXXXXXXXXXXXQARGHIIEKIP 520
ARGH IE +P
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVP 151
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 169 bits (411), Expect = 1e-42
Identities = 83/147 (56%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Frame = +2
Query: 86 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 259
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 260 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 439
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 440 XXXXXXXXXXXXXXXXQARGHIIEKIP 520
ARGH IE +P
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVP 152
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.080
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 266 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 376
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N + P+F V L G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N I +PTF +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 152 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 328
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 329 HRSGQGA 349
+ + + A
Sbjct: 168 NDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 264
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 344 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 243
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 341 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 243
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N I +PT +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 508 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 401
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 188 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 358
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 359 MCRGGRMFAPTKPWRRW 409
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 251 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 355
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL+ N ++ +PT V L ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 392 SWGRTYVHHDTCYRRHPDRTYEYHH 318
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 182 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 90
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 268 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 137
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 335 TYEYHH-HGHAEFGRQHVQYPMIQH 264
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 161 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 274
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 155 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 325
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 326 T 328
T
Sbjct: 215 T 215
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 245 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 403
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 307 RNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 179
R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 87 RDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 385 PHEALAALAPSRQPPTAESGLGGSRCCYR 471
P A A AP+ P A+ G GG C R
Sbjct: 15 PAAAAGAAAPTTPPAAADGGAGGESCSPR 43
>02_03_0152 - 15767985-15768317
Length = 110
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = -1
Query: 356 YRRHPDRTYEYHHHGHAEFGRQ----HVQYPMI-QHWFGDQPP 243
YR P HG AEF RQ H +P HW +PP
Sbjct: 19 YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,768
Number of Sequences: 37544
Number of extensions: 331817
Number of successful extensions: 1407
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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