Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    99   3e-22
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    38   0.001
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.32 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.97 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.7  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   3.9  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   3.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.9  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   6.8  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   6.8  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   6.8  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   9.0  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 55/140 (39%), Positives = 81/140 (57%)
 Frame = +3

Query: 51  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEHFLEDLQKGGTG 230
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60

Query: 231 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 410
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 411 KYIQATDLSEASQEAVEEKL 470
             IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 28/86 (32%), Positives = 44/86 (51%)
 Frame = +3

Query: 117 RYVVFYIRDEKQIDVETVGERNAEYEHFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 296
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIE---SDFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 297 KKQKLFLMSWCPDTAKVKKKMLYSSS 374
           KK  L L+S+ P+ A V++KMLY+SS
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 306 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 458
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 282 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 461
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 462 EKL 470
           E L
Sbjct: 138 EFL 140


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 4/164 (2%)
 Frame = +3

Query: 24  LRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGE----RNAEY 191
           LR    ++  G    D+  ++ +E  ++KK +   F  RD++++ ++        RN   
Sbjct: 41  LRSEGSELIFGGRSFDSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTPRNRTQ 100

Query: 192 EHFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSS 371
                  +K    E      +F+   Q   T  A+K     +    P T    K  + ++
Sbjct: 101 IIDARSTRKDTENES-LRKNNFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNA 159

Query: 372 SFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFT 503
              A KK + G +KY    + S    +  E K R  DR  + FT
Sbjct: 160 ERPASKKPVFGSKKYFDVINDSNVENKE-ETKDRNLDRALSKFT 202


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 372 SFDALKKSLVGVQKYIQATDLSEASQ 449
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
 Frame = +3

Query: 78  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEHFLEDLQKGGTGECRYGLFDF 257
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 258 EYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLS 437
           +   +  G    S+K    ++      A V K      ++   +K++    K ++  +  
Sbjct: 167 Q--KKVHGPPALSEKPGKCILK-DKTNAHVNKIPQDEVNYSLPQKNITIFSKELKENEFE 223

Query: 438 EASQ-EAVEEKLRATD 482
             ++ E  EEK + ++
Sbjct: 224 SINEGETEEEKAKTSN 239


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = -2

Query: 421 WMYF*TPTRDFFRASNELEYNIFFLTLAVSGHHDIRKSFCFLLASDVPWHWCVYSKSNRP 242
           W YF    +    A +E     F   LA S    +R     +L   +   + ++  SN  
Sbjct: 255 WNYFVLECQKKGIAVDESLICSFVKLLATSNSPQVRNVGLNILTKVMGLEYQIFEDSNLR 314

Query: 241 YLHSPVPPFCRSSRKCSYSALR 176
           Y   P+PP+C  + +   +AL+
Sbjct: 315 Y---PLPPYCDCTSRSLVTALQ 333


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 192 EHFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAK--VKKKMLY 365
           E+F+       +G C YG     YT+  Q     S     +L+ W     K  V+   LY
Sbjct: 45  EYFMSTTSTIASGHCEYGTKGITYTNHLQFILTIS-----YLVHWDLSQVKPLVENNRLY 99

Query: 366 SSSFDAL 386
               DAL
Sbjct: 100 QQRADAL 106


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 325 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 209
           HD+     +++ S   +H C  ++S  P+     LH+P+P  C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 IRDEKQIDVETVGERNAEYEH 197
           I D K+++  T+GE+   +EH
Sbjct: 48  IIDGKEVETNTIGEQRCPFEH 68


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 60  TVSDACKTTYEEIKKDKKHRYV 125
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 57  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 161
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 277 WHWCVYSKSNRPY--LHSPVPPFCRSSRKCSYSALRSPTVSTSICF 146
           W++  Y+ S R Y      VPP+CR         +R+     + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 324 TTSGRASVSC*PPT 283
           TTSG  S SC PPT
Sbjct: 179 TTSGSTSTSCPPPT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,967
Number of Sequences: 5004
Number of extensions: 35146
Number of successful extensions: 108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)