Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319H02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 LV*YRLNLLILKMHKKSYYLLYVDN 479
           LV  R+NL + KM K S  L  VDN
Sbjct: 290 LVLSRMNLTLAKMEKTSKPLPMVDN 314


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 118 WHSTFYEFSLKQANRNSGEKIE 53
           W     +  LK  N+N G+K+E
Sbjct: 166 WTYDGIQIDLKHINQNMGDKVE 187


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 339 EKVKGSREGEEKENDQIQIVSVLV*YRLNLLILKMHKKSYYLLYVDN 479
           +K  GS+ GE +E  +     +L    L L  +K  ++ +YL    N
Sbjct: 744 KKATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYLCQASN 790


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 339 EKVKGSREGEEKENDQIQIVSVLV*YRLNLLILKMHKKSYYLLYVDN 479
           +K  GS+ GE +E  +     +L    L L  +K  ++ +YL    N
Sbjct: 740 KKATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYLCQASN 786


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 268 SINTFKLHRKNIRCHITSNNGCSA*TFMATQYLR 167
           S+N  KL+    +C    NN  +   F    YLR
Sbjct: 455 SVNIDKLYTYFDKCDTLINNAVAVENFKGGMYLR 488


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 268 SINTFKLHRKNIRCHITSNNGCSA*TFMATQYLR 167
           S+N  KL+    +C    NN  +   F    YLR
Sbjct: 455 SVNIDKLYTYFDKCDTLINNAVAVENFKGGMYLR 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,580
Number of Sequences: 438
Number of extensions: 2534
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)