Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 63  PAHSRTPEPRPTPRHVVDSTSTSPCQTQPLDLGVPRDDXRPIIPL 197
           P      +  P+P+       + P Q QP +     D  R I+PL
Sbjct: 490 PTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPL 534


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 54  PPPPAHS--RTPEPRPTPRHVVDSTSTSPCQTQPLD 155
           PPPP       P P P P +V    + +P Q+  L+
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLE 48


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +3

Query: 57  PPPAHSRTPEPRPTPRHVVDSTSTSPCQTQPLDLGVPRDDXRPIIPLEEEQH 212
           PPPA      P+  P   + S S    Q   +   VP+    P++P     H
Sbjct: 484 PPPAM-----PKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVH 530


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 367 RAXYHLQMEVSKHQNAQRVLHRPQDMRSPRVRLQR 471
           R  +HL+  VS HQ+A + +  P+   + + +L R
Sbjct: 47  RYKHHLETNVSSHQSATKFI-EPEPSPTKKTKLTR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,633
Number of Sequences: 5004
Number of extensions: 25062
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)