Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 100 GVGRGSGVRECAGGGGHVLGTGENVDGGGYG 8
           G     GV   A GG  V+G      GGG G
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 109 TCRGVGRGSGVRECAGGGGHVLGTGEN 29
           T RG GRG G     G GG+   TG N
Sbjct: 78  TGRGKGRGHGKGGSRGRGGNRGRTGFN 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 163 TPKSKGCVWHGDVEVESTTCRGVGRGSGVR 74
           TP+S G  W GD ++     R + R   +R
Sbjct: 912 TPRSPGRAWPGDSDIRQ---RPIPRSDDIR 938


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,966
Number of Sequences: 438
Number of extensions: 2169
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)