Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319G08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
 Frame = -1

Query: 437 FVCRSTNSKNSL--------CD*YDILLIPQIRSLEKVDIGHTI 330
           FVC+   S ++L        CD YD  +IP+ ++  K+D G +I
Sbjct: 26  FVCKDITSTSALYRLKLYLFCD-YDRDIIPEQKNATKIDFGLSI 68


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 115 GSRLPAHCQIGRP 77
           G  LP H Q+GRP
Sbjct: 211 GRHLPGHAQMGRP 223


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 330 YGVPDVDLFQTTDLWDQKNIVLVTQTIFAIGRTAYKHPE 446
           Y   D D+F  T LW  KN +   Q I+++       P+
Sbjct: 116 YHAKDFDIFFKTALW-AKNNINEAQYIYSLYTAVITRPD 153


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 330 YGVPDVDLFQTTDLWDQKNIVLVTQTIFAIGRTAYKHPE 446
           Y   D D+F  T LW  KN +   Q I+++       P+
Sbjct: 116 YHAKDFDIFFKTALW-AKNNINEAQYIYSLYTAVITRPD 153


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 57  SSSIKMPGRPIWQC 98
           S+ +++PG  IW C
Sbjct: 365 SAVLELPGSSIWSC 378


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 57  SSSIKMPGRPIWQC 98
           S+ +++PG  IW C
Sbjct: 418 SAVLELPGSSIWSC 431


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 91 QIGRPGILIEEDFSNYHNII 32
          Q  R  ILI++ F N HN I
Sbjct: 40 QANRACILIKDLFDNVHNHI 59


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 91 QIGRPGILIEEDFSNYHNII 32
          Q  R  ILI++ F N HN I
Sbjct: 23 QANRACILIKDLFDNVHNHI 42


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 337 TPYLMQAFWNWL 302
           TPY + + W W+
Sbjct: 274 TPYYVMSLWYWI 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,823
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)