Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.97 
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   5.2  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   6.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   9.0  

>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 327 DEPSRNGIAIWSVSYHQPLDRLLAWGFYIFC 235
           +EP  N    W   Y +PLD + AW + I C
Sbjct: 44  EEPDENNPTRWR--YERPLDTVRAWQYLIDC 72


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = -2

Query: 202 RLRLCPLDITAGFGT----GSREPLRVLERLLSRSDIAMFVVNKRDKSEISRIFS-INTL 38
           +L+   +D+ AG+GT    G   P R +ERL +  + A+F   +    +++   S I  L
Sbjct: 37  KLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVAL 96

Query: 37  KRSTSIYRRDR 5
           ++   +Y   R
Sbjct: 97  RKKMGLYANVR 107


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 321 PSRNGIAIWSVSYHQPLDRLLAWG 250
           P  + + IWS+ YH PL  LL  G
Sbjct: 356 PFAHDLGIWSMQYH-PLGHLLCTG 378


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 AASWTGFDYVLWTSPQVSVP 157
           AA W G +Y LW++   S+P
Sbjct: 663 AAHWLGDNYSLWSNMIFSIP 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,692
Number of Sequences: 5004
Number of extensions: 27466
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)