Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F09f
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   4.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   4.8  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    24   6.3  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    24   8.3  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    24   8.3  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 19   HECS*SNWFTSRGNISRYVSDISNRKHLPSSQY 117
            HE S SN F SR    RY +D S  +    S Y
Sbjct: 1182 HEFSKSNDFCSRSCAERYPTDSSIMREFGGSAY 1214


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 286 YFTSCHRLVARTRSVAALQRIKYTHNNIRLTNSSLVYNILKATGALPIYGP 134
           Y T+C +  A+ R      +I+ T    ++     VYN     GALP  GP
Sbjct: 62  YLTTCGKKTAQLRD-----QIRDTLQATQMKQMPSVYNNAGNVGALPTAGP 107


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 251 SLGRGAPTYKIYTQQYPSDK 192
           ++ +  PT+KIYTQQ   +K
Sbjct: 522 AIAKHPPTFKIYTQQLLQEK 541


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 156 ARYRFTAPRFVVSVLRRRQVFAIRNIAHVSTYIAA*RKPV*L*ALVSAREL 4
           A+    A   + S+ RRR +  IR    VST I A ++ V   A+ + R L
Sbjct: 193 AKLALDAIVIIDSIGRRRDILPIRTTTCVSTLITAVQETVRFLAIENGRLL 243


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 302 KTKYALFHIVSSVGRPDSLGRGA 234
           KTKYA+ +I+  +   D+  RGA
Sbjct: 159 KTKYAIENIIKDLHTSDNTWRGA 181


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 275 VSSVGRPDSLGRGAPTYKIYTQQYPSDKQFVGL*H 171
           + SV +  + G    TYK+  + +P + QF+ + H
Sbjct: 148 IGSVDQLTTKGLSKLTYKVLEKLFPENTQFILIGH 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,914
Number of Sequences: 5004
Number of extensions: 25792
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)