Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F09f
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648...    27   3.4  
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    27   4.5  
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838...    26   7.9  

>02_02_0497 +
           10961079-10963824,10964182-10964282,10964759-10964800,
           10966918-10966986
          Length = 985

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 97  HLPSSQYAYNKTWGRKSVTRQSLLRCYKPTNCLSD 201
           +L  ++  +    GR  VT  +++ CY   NC+ D
Sbjct: 556 YLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVED 590


>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 250 RSVAALQRIKYTHNNIRLTNSSLVYNILKATGA-LPIYGPTFCCKR 116
           R +  L  +KY HN+ RLT   +VYN++  T A L   G T   KR
Sbjct: 282 RLILTLAGLKY-HNH-RLTTVEIVYNVISITVAFLVAIGFTVYAKR 325


>10_08_0532 +
           18580579-18580746,18581923-18581997,18582659-18583887,
           18584853-18585013,18585272-18585279,18587737-18588768
          Length = 890

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = +1

Query: 25  CS*SNWFTSRGNISRYVSDISNRKHLPSSQYAYNKTWG---------RKSVTRQSLLRCY 177
           C  S W T R ++     D++NR  L +  Y  ++            ++     SLL+CY
Sbjct: 546 CHLSMWMTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCY 605

Query: 178 KPTNCL 195
              NC+
Sbjct: 606 AEANCV 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,044
Number of Sequences: 37544
Number of extensions: 174246
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)