Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319F09f
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74039-1|CAA98503.1| 451|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF016416-4|AAB65273.2| 150|Caenorhabditis elegans Hypothetical ... 27 4.0
AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical ... 27 5.3
Z48716-2|CAA88597.2| 169|Caenorhabditis elegans Hypothetical pr... 26 7.0
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 26 7.0
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 26 7.0
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 26 7.0
Z70780-4|CAD54137.2| 786|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical pr... 26 9.3
U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate rece... 26 9.3
>Z74039-1|CAA98503.1| 451|Caenorhabditis elegans Hypothetical
protein K03B8.1 protein.
Length = 451
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 55 GNISRYVSDISNRKHLPSSQYAYNKTWGRKSVTRQSLLRCYKPTNC 192
G+ Y +D+S L Q Y +T G + VT +L NC
Sbjct: 227 GSTLHYTADVSGTNSLLPKQMEYYRTLGNRRVTFYDMLTINTAYNC 272
>AF016416-4|AAB65273.2| 150|Caenorhabditis elegans Hypothetical
protein F29A7.3 protein.
Length = 150
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 287 LFHIVSSVGRPDSLGRGAPTYKIYTQQYPSDKQFVGL 177
L++ V V R DS G G ++++T+Q PS K V L
Sbjct: 80 LWNSVEKVKRNDSGGEGLTAFRVFTEQ-PSCKLNVAL 115
>AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical
protein T06D4.4 protein.
Length = 684
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 301 KLNMLYFTSCHRLVARTRSVAALQRIKYTHNNIRLTNSSL 182
KLN+ Y S H+++ + R + Q I+Y ++ T+ +
Sbjct: 444 KLNLTYSDSLHKIIQKLRRFRSEQLIEYLGGDLDPTDKGM 483
>Z48716-2|CAA88597.2| 169|Caenorhabditis elegans Hypothetical
protein F59B10.3 protein.
Length = 169
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 121 YNKTWGRKSVTRQSLLRCYKPTNCLSDGYC 210
Y+ +G + + RCYK C +DG C
Sbjct: 52 YDCIYGVANSANTVIERCYKDIGCCADGCC 81
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 301 KLNMLYFTSCHRLVARTRSVAALQRIKYTHNNIRLTNSSLVYNIL 167
KL +Y +S H L+ TRS+ ++ NN RL N+S+ +L
Sbjct: 200 KLRRVYNSSAHALLFATRSIQ-----QFIVNNSRLINASVSVVVL 239
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 301 KLNMLYFTSCHRLVARTRSVAALQRIKYTHNNIRLTNSSLVYNIL 167
KL +Y +S H L+ TRS+ ++ NN RL N+S+ +L
Sbjct: 197 KLRRVYNSSAHALLFATRSIQ-----QFIVNNSRLINASVSVVVL 236
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 301 KLNMLYFTSCHRLVARTRSVAALQRIKYTHNNIRLTNSSLVYNIL 167
KL +Y +S H L+ TRS+ ++ NN RL N+S+ +L
Sbjct: 197 KLRRVYNSSAHALLFATRSIQ-----QFIVNNSRLINASVSVVVL 236
>Z70780-4|CAD54137.2| 786|Caenorhabditis elegans Hypothetical
protein F46B6.5b protein.
Length = 786
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -1
Query: 268 RLVARTRSVAALQRIKYTHNNIRLTNSSLVYNILKATGAL----PIYGPTFCCKRTETKA 101
R A S++ +Y+HNNI + N + GAL P PT T+ ++
Sbjct: 678 RRSANLPSLSPANSEEYSHNNIPVNNHPKGQSFAPRKGALLSAKPKLSPTSSSHSTDPES 737
Query: 100 SVC 92
S C
Sbjct: 738 SSC 740
>Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical
protein F46B6.5a protein.
Length = 828
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -1
Query: 268 RLVARTRSVAALQRIKYTHNNIRLTNSSLVYNILKATGAL----PIYGPTFCCKRTETKA 101
R A S++ +Y+HNNI + N + GAL P PT T+ ++
Sbjct: 720 RRSANLPSLSPANSEEYSHNNIPVNNHPKGQSFAPRKGALLSAKPKLSPTSSSHSTDPES 779
Query: 100 SVC 92
S C
Sbjct: 780 SSC 782
>U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 4 protein.
Length = 951
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 229 RIKYTHNNIRLTNSSLVYNILKATGALPIYGPTFCCKRTETKASVCD 89
R+K T+ I N +++YN+L+ L + P F T T S+ +
Sbjct: 212 RLKQTNIIIHSNNITVLYNLLQQARGLNMAEPPFSYVFTNTDLSLLE 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,825,126
Number of Sequences: 27780
Number of extensions: 151322
Number of successful extensions: 343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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