Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    27   1.3  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   1.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   3.0  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   3.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   9.0  

>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 40  LFNVTISIGFIITVSFTINKKTSCSINIHSKP 135
           L N  ++IG +  V  +I++KT C ++I++ P
Sbjct: 453 LENGALAIGVVNCVGSSISRKTHCGVHINAGP 484


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 291 YLYFSKCYFHVKIL 332
           +LY SKCY+H  IL
Sbjct: 71  FLYLSKCYYHTHIL 84


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 519  LQTINKLQQAMTAEDYTTKVPVEVQKINTEK 427
            LQT+  L + M  ED+T  +P++V   +  K
Sbjct: 1203 LQTLLNLAEYMEREDHTLPIPIKVISAHASK 1233


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 230 FSGSTLFLGNIT*VAFVTLG 289
           F GST FLGN T +A + LG
Sbjct: 388 FFGSTGFLGNATVIAILALG 407


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 479 KIIPQKCRLKCKRSTP 432
           K  P+KCR +C+RS P
Sbjct: 15  KCRPKKCRQECRRSCP 30


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 492 AMTAEDYTTKVPVEVQKINTEKLAQSQGEIEKLLSA 385
           ++TAE++ +    +   ++   L +S+G +EK +SA
Sbjct: 373 SLTAEEWASGKDAQPDLLDMSTLYESKGTVEKAVSA 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,536
Number of Sequences: 5004
Number of extensions: 36906
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)