Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    30   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.42 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.2  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 359 ELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN-NTTPSYEYRIMSNS 511
           +LQ QQ+   E+    +T +QQ  S    G F  N + NT P+    I+SNS
Sbjct: 114 KLQVQQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTS--ILSNS 163


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 321 APQAPPVAPRSPILQPLP 268
           AP APP+ P +PI  PLP
Sbjct: 443 APAAPPLPPSAPIAPPLP 460


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +2

Query: 395  GTSTATTSQQM-------YSYKMSGGFTSNGNNTTPSYEYRIMSNSN 514
            GTST +T +Q        Y+Y  +GGFT  GNNT  +  Y   + +N
Sbjct: 1499 GTSTWSTVRQWNGSATYNYTYYTTGGFT-GGNNTNVTGLYPSSAGAN 1544


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 315 QAPP-VAPRSPILQPLPVVNQFLYVFCPFRGRLRY 214
           QAPP   P+ P   P P+ N    V+ P  GRL Y
Sbjct: 49  QAPPHTNPQGP--PPFPLFNSISPVYDPATGRLLY 81


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 263 TTGSGCRMGERGATGGAWGARDDASWWPSS---AGELQHQQQ-LNEEIGTSTATTS 418
           TT +G   G   A+GG +G  ++ +  PS+    G   +QQ+      G++T TT+
Sbjct: 291 TTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTN 346


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 371 QQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTP 481
           Q+QL  E     A  S  +YS++    F S  N  TP
Sbjct: 183 QRQLENERSRLIARFSHSLYSFQHGLSFGSPQNRNTP 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,189
Number of Sequences: 5004
Number of extensions: 39020
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)