Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319F07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 1.5
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 29 1.5
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 1.5
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 1.5
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 1.5
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 2.0
U64601-4|AAB04574.1| 163|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical pr... 28 3.5
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical ... 28 4.7
Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 6.2
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 6.2
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z69302-3|CAA93266.1| 442|Caenorhabditis elegans Hypothetical pr... 27 6.2
X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein. 27 6.2
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 347 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 517
S G +QQQ N+ + S Q Y + GF NGNN R +N ++
Sbjct: 965 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 1019
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 347 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 517
S G +QQQ N+ + S Q Y + GF NGNN R +N ++
Sbjct: 723 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 777
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 347 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 517
S G +QQQ N+ + S Q Y + GF NGNN R +N ++
Sbjct: 659 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 713
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform c protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 347 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 517
S G +QQQ N+ + S Q Y + GF NGNN R +N ++
Sbjct: 888 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 942
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 347 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 517
S G +QQQ N+ + S Q Y + GF NGNN R +N ++
Sbjct: 965 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 1019
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 350 SAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYE 490
+A + Q QQQ ++ AT +Q M GG + N++P Y+
Sbjct: 192 AAMQQQRQQQQQNQVQQMLATQAQLMDEISDGGGTNDSDRNSSPFYQ 238
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 350 SAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYE 490
+A + Q QQQ ++ AT +Q M GG + N++P Y+
Sbjct: 192 AAMQQQRQQQQQNQVQQMLATQAQLMDEISDGGGTNDSDRNSSPFYQ 238
>U64601-4|AAB04574.1| 163|Caenorhabditis elegans Hypothetical
protein M03F4.4 protein.
Length = 163
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 441 ILYEYIC*-LVVAVLVPISSFNC--CWCCSSPALLGHHEASSRAPQA 310
+L+ +C LV AVL+P+ F CSS L H+ +SS +PQA
Sbjct: 116 LLFANVCNALVAAVLLPLRMFRLHKIASCSSFNTLPHYISSSSSPQA 162
>Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical
protein T04C10.2b protein.
Length = 469
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 360 SPALLGHHEASSRAPQAPPVAPRSPILQPLPVVNQF 253
SP L A +AP P +APR + Q P N F
Sbjct: 434 SPTLNEMRAAQGQAPPIPSMAPRGTLPQANPFANPF 469
>Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical
protein T04C10.2a protein.
Length = 467
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 360 SPALLGHHEASSRAPQAPPVAPRSPILQPLPVVNQF 253
SP L A +AP P +APR + Q P N F
Sbjct: 432 SPTLNEMRAAQGQAPPIPSMAPRGTLPQANPFANPF 467
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
protein C27F2.8 protein.
Length = 1715
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 413 TSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSN 514
TS +++YKM G SN +P YR+ NS+
Sbjct: 83 TSVGVFTYKMQGNCDSNPYRISPFTGYRLPMNSS 116
>AC006665-3|AAF39905.1| 605|Caenorhabditis elegans Hypothetical
protein H27M09.3 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Frame = +2
Query: 233 KGQNT*RNWLTTGSGCRMGERGATGG------AWGARDDASWWPSSAGELQHQQQLNEEI 394
K N N+ G GE G G GA DD S S G+L E+
Sbjct: 491 KSNNFSFNFFGNSKGTSAGEGGGEGNFDFNFDGIGAGDDGSNNGGSTGDLDFLNYDGEDE 550
Query: 395 GTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEY 493
G + T + + +G G + + ++ +
Sbjct: 551 GKGSGNTQSDPFGFASNGNAAGGGGDGSFNFNF 583
>Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical
protein M142.4 protein.
Length = 247
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 257 WLTTGSGCRMGERGATGGAWGARDDASWWPSSAGEL 364
W+ T + + G G GA+G + +S PS+AG L
Sbjct: 152 WMKTAAASQFGATGPGNGAYG-NNGSSTSPSAAGSL 186
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 2161 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 2206
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 2183 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 2228
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 1004 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 1049
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 982 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 1027
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 2161 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 2206
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 272 SGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTA 409
S RM + G G WG D+ S W + Q N + S +
Sbjct: 2183 SKMRMFDEGKVGNIWGKSDEDSAWGGLFSQFLPQLGANSSLNNSNS 2228
>Z69302-3|CAA93266.1| 442|Caenorhabditis elegans Hypothetical
protein F40F8.8 protein.
Length = 442
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 381 NCCWCCSSPAL 349
NCCWCC AL
Sbjct: 167 NCCWCCQRGAL 177
>X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein.
Length = 263
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 257 WLTTGSGCRMGERGATGGAWGARDDASWWPSSAGEL 364
W+ T + + G G GA+G + +S PS+AG L
Sbjct: 168 WMKTAAASQFGATGPGNGAYG-NNGSSTSPSAAGSL 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,358,478
Number of Sequences: 27780
Number of extensions: 231846
Number of successful extensions: 889
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -