Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F05f
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   3.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    24   4.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    24   4.7  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    24   6.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   6.3  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    24   6.3  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    24   6.3  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    23   8.3  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    23   8.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    23   8.3  

>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 35  WSIFSIKDFNYLAQKLYKMGCKLCGPKLSLCGLVLSVWG 151
           W++F+  D+N ++    K+G K   P +    L  S+ G
Sbjct: 280 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 318


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 88  NGLQTMWTKIVALWPSFERMGHHSVDVD 171
           N +Q +W  I+   P  + +G  SVD D
Sbjct: 713 NAMQILWINILMDGPPAQSLGVESVDED 740


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 35  WSIFSIKDFNYLA-QKLYKMGCKLCG 109
           WS F + D+NYL+   +Y    +  G
Sbjct: 86  WSYFELSDYNYLSFNDIYDKALRYAG 111


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 GLVLSVWGIIQLTLMGVFYYIRAVALLEDLP 220
           G   S W ++  T + +F  I  +  L+D+P
Sbjct: 520 GKYRSAWDLLSFTNLDLFCVISCIPKLKDIP 550


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 197 QLEYNKRRPSTSTE*CPIRSKLGHKATI 114
           Q  + ++RPS  T  CP   KL  K T+
Sbjct: 383 QFGFLQKRPSHDTPLCPEDIKLNQKQTL 410


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 147 HTLKTRPQSDNFGPHSLQPIL 85
           H+    PQS++  P+S+ P+L
Sbjct: 454 HSSSATPQSESSSPNSVSPLL 474


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 245 NEADFSHQMVDLPAERQLEYNKRRPSTSTE 156
           NE   +  + DLP  R++ YN +RP  + E
Sbjct: 326 NEDGTTTVIDDLPKVREILYNYQRPGINPE 355


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 209 EDLPFDEKNPPHSIEDFVIEVEKGYTPECTKLV 307
           E    D  NP H+ +D    +E+G  P  T  V
Sbjct: 235 EAAALDGSNPDHARQDLFEAIERGDYPSWTLYV 267


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 163 DVDGRLLLYSSCRSAGRSTI**EKSASFYRRLRH*SGKR 279
           D+D R  LYS+   +G ST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 249 SKTSSLKWKKDIPLNAQN 302
           SK SSL W +   LN QN
Sbjct: 23  SKASSLNWNEPHTLNEQN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,131
Number of Sequences: 5004
Number of extensions: 24696
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)