Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F05f
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161...    28   1.8  
06_01_0438 + 3110703-3111945,3112486-3113057                           26   5.4  
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963...    26   7.1  
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    25   9.4  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    25   9.4  
07_03_0722 + 20946201-20947327,20949531-20950791                       25   9.4  

>03_05_1133 -
           30614901-30615389,30615823-30615933,30616113-30616178,
           30616347-30616406,30616493-30616801,30616960-30617108,
           30617200-30617269,30617370-30617494,30617516-30617573,
           30618176-30618370,30618585-30618857,30618950-30619120,
           30619203-30619333,30619423-30619582,30619712-30619900,
           30620023-30620118,30620381-30620611,30620715-30620853,
           30620903-30621057,30621160-30621378
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 53  KDFNYLAQKLYKMGCKLCGPKLSLCGLVLSVW 148
           +D++ +A    +MG   C   + +CGLV S+W
Sbjct: 109 RDYDQIANLAKRMGLYRCR-NIEICGLVFSLW 139


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 215 DLPAERQLEYNKRRPSTSTE*CPIRSKLGHKATILVHIVCS 93
           +LP  R L  +K+ P   +  C  +  LG  A   V IVC+
Sbjct: 32  ELPPTRDLAMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCA 72


>01_05_0593 +
           23494515-23494706,23495819-23495936,23496302-23496384,
           23496468-23496524,23497004-23497112,23497230-23497282,
           23497644-23497724,23497815-23497931
          Length = 269

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 AERQLEYNKRRPSTSTE 156
           A R   YNKRRP T+TE
Sbjct: 24  AARSEGYNKRRPETTTE 40


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 83  YKMGCKLCGPKLSLCGLVLSVWGIIQLTLMGV--FYYIRAVALLEDLPFDEKNPPHSIED 256
           YK+   +C    SL   + S+  +  L L G    Y    ++ +E + F++  PPH++ED
Sbjct: 508 YKVRTNIC----SLPEAIGSLQSLQILNLQGTDEAYSEEGISNVEKI-FEKLEPPHNLED 562

Query: 257 FVI 265
            VI
Sbjct: 563 LVI 565


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 157 SVDVDGRLLLYSSCRSAGRST 219
           S+D D  LL YSS   AGRS+
Sbjct: 465 SIDEDSSLLYYSSIDLAGRSS 485


>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 206 LEDLPFDEKNPPHSI-EDFVIEV 271
           +EDLP   +NP  S+ +D V+E+
Sbjct: 1   MEDLPMGRRNPAASLTDDLVVEI 23



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 206 LEDLPFDEKNPPHSI-EDFVIEV 271
           +EDLP   +NP  S+ +D V+E+
Sbjct: 419 MEDLPMGRRNPAASLTDDLVVEI 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,205,098
Number of Sequences: 37544
Number of extensions: 143921
Number of successful extensions: 342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)