Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319F05f
(315 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 58 2e-09
U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical pr... 37 0.004
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 27 2.8
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 27 2.8
AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical ... 26 5.0
Z49913-1|CAA90142.1| 340|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical p... 25 8.7
U80836-9|AAB37895.1| 303|Caenorhabditis elegans Hypothetical pr... 25 8.7
U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 25 8.7
>Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical
protein F49C12.12 protein.
Length = 95
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIED 256
C L GPK+S +V+SVWG+I L L+GVF+YI+AV L DL F+ P S+ D
Sbjct: 5 CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSVID 59
>U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical
protein C46G7.1 protein.
Length = 93
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 107 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEK 232
GP + L L++WG + + ++G +Y ++V L EDLP + K
Sbjct: 3 GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESK 44
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 155 IQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVI 265
+ T++ VF ++ + L + L + KNPPHS+ V+
Sbjct: 388 VMFTIIAVFRFVFIIILFKVLIY--KNPPHSLTTTVL 422
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 245 SIEDFVIEVEKGYTPEC 295
++ DFV+E+EKGY C
Sbjct: 630 NVHDFVMELEKGYDTNC 646
>AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical
protein R02D3.2 protein.
Length = 743
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 94 LQTMWTKIVALWPSFERMG 150
L +WTK++A+ SF RMG
Sbjct: 307 LSAVWTKLMAMASSFGRMG 325
>Z49913-1|CAA90142.1| 340|Caenorhabditis elegans Hypothetical
protein ZK938.2 protein.
Length = 340
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 214 IFQQSDSSNIIKDAHQRQLNDAPYA 140
++ Q++SSN I +A ++N APY+
Sbjct: 232 VYHQTNSSNCIGEATALKVNVAPYS 256
>Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical
protein C07A9.11 protein.
Length = 672
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 207 WKIYHLMRKIRLILSKTSSLKWKKDIPLNAQNW 305
W+ ++ K+ ++ +L +K IPLN +W
Sbjct: 415 WEEMNIFSKVMAYINVVPNLLFKLTIPLNEMSW 447
>U80836-9|AAB37895.1| 303|Caenorhabditis elegans Hypothetical
protein B0432.10 protein.
Length = 303
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 186 IFELSLCWKIYHLMRKIRLILSKTSSLKWKKDIPLNAQ 299
+ +L+ ++++ LMR I LS+T + W + I L Q
Sbjct: 201 LIQLAQTYRMHKLMRVIEENLSETKLMNWDEKILLALQ 238
>U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical
protein F55E10.7 protein.
Length = 518
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 88 NGLQTMWTKIVALWPSFERMGHH--SVDVDGRLLLYSSCRSAGRSTI 222
N T+ T + +W + ++MG H + +D R L G+S I
Sbjct: 389 NATSTVNTSLTPIWKNIQQMGSHIKTAGLDTRSALMKKSPFKGKSKI 435
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 147 HTLKTRPQSDNFGPHSLQPILYN 79
+++KT+P DNF +S +LYN
Sbjct: 126 NSVKTKPAIDNFRFNSYDSLLYN 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,247,356
Number of Sequences: 27780
Number of extensions: 132602
Number of successful extensions: 327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -