Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F05f
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   3.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 MWTKIVALWPSFERMGHHSVDVDGRLLL 186
           +W +++  +   + +  HS D DGR LL
Sbjct: 157 VWVELLKHFNYMKVIFIHSSDTDGRALL 184


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 314 PXPPVLCIQGYILFPLQ*RSLR*NEADFS 228
           P PPV   QG  +  +  R +  N  DF+
Sbjct: 43  PLPPVTPPQGENMLDMDLRGIYSNRTDFT 71


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 270 WKKDIPLNAQNW 305
           W++DI +N  +W
Sbjct: 199 WREDIGINLHHW 210


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = +3

Query: 177 SFIIFELSLCWKIYHLMR 230
           S ++    +CW  +H+ R
Sbjct: 263 SAVVITFFICWAPFHVQR 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,719
Number of Sequences: 438
Number of extensions: 1627
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)