Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   3.0  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   3.9  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   5.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.2  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   9.0  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.0  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   9.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   9.0  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 170 FYSAYYKYNKYFTNNHATLTGSVISSLRTCVTGT 271
           +YS      K+F+ N+A  +G V  S   C++ T
Sbjct: 372 YYSHLQMVAKHFSKNYANQSGIVQRSFAECISST 405


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 137 INASKEKRGYLFYSAYYKYNKYFTNN---HATLTGSVISSLRTCVTGTRYR 280
           +NA+   +  +F++AYY   K   +N      L  +V + +R+  TG R R
Sbjct: 355 LNAASAVKRSVFWTAYYTKAKLMRHNLPGSCVLDTAVFNKIRSMGTGGRLR 405


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 152 EKRGYLFYSAYYKYNKYFTNNHATLTGSVIS 244
           + R + FY  Y    K+FT  +  L  S++S
Sbjct: 357 QPRKHTFYQMYENIEKFFTTENGGLYESIVS 387


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 164 YLFYSAYYKYNKYFTNNHATLTGSVISSLRTCVTG 268
           Y +YSAY   N Y  N H  L     +S R    G
Sbjct: 348 YWYYSAYNSPNLYTKNYHIRLNNKPPASCRWTACG 382


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 343 KDIYIYHTNIFPCRDSNPRPPSVVTMS 423
           K IY  H NI+P   ++P P S VT++
Sbjct: 212 KIIYDIHHNIYP--STSPNPTSPVTLN 236


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 375 EDICMININVFSRVMD 328
           +D C++ IN+ SR++D
Sbjct: 345 DDTCLLKINILSRLLD 360


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 343 KDIYIYHTNIFPCRDSNPRPPSVVTMSLTTTPDG 444
           KD++ +   + PC D + R       SL   P+G
Sbjct: 187 KDVFFFQQGVLPCLDISGRVLFESDSSLAWAPNG 220


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 343 KDIYIYHTNIFPCRDSNPRPPSVVTMS 423
           K IY  H NI+P   ++P P S VT++
Sbjct: 212 KIIYDIHHNIYP--STSPNPTSPVTLN 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,638
Number of Sequences: 5004
Number of extensions: 41469
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)