Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   1.3  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    27   1.7  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   1.7  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   2.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   3.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.0  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 59  KMTWNIIGRESGKVRNSHQEFSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPT 238
           K +W  I  E+  +++  +   + +D        ++ N   +F S IP+ST TS +SSP 
Sbjct: 411 KNSWTAISEETEGLQDDEEYNGIPVDVN------ELLNV--EFISQIPMSTETSSSSSPQ 462

Query: 239 AAE 247
             E
Sbjct: 463 PTE 465


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 EFSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSL 223
           EFS  +   +     ++A   EK +S+IP+S  TSL
Sbjct: 159 EFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSL 194


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 104  NSHQEFSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKHVNKCNE 283
            N   E +L     L  S K+      + F + P  TTT L + PT  +I+  K+     E
Sbjct: 1040 NKPTEITLTFLRSLTHSKKEKQGQSFEIFYNFPAYTTTILFAGPTQRKIVWEKNQTTAQE 1099


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 11  KSLHL--SDLIKNAPDKIKMTWNIIGRESGKVRNSHQEFSLKIDDKLVTSHKDVAN 172
           K+LHL   DL+KN  D+  +TW ++ R    +  + QE +  +  +L+    DV N
Sbjct: 180 KALHLLCQDLLKNILDENSLTW-LVARHPLALLKTEQEKTFLLRARLLNG-LDVPN 233


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 496 RGITLLCFIKSGNTPHXNTIIKNTSKMRSNN 404
           R I L  F+K  NTP+  +++  T     NN
Sbjct: 625 RQIDLSTFVKQANTPNITSLLDGTCSSPPNN 655


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 20  HLSDLIKNAPDKIKMTWNIIGRESG 94
           HL D I+N PD       +I RESG
Sbjct: 397 HLQDCIRNGPDVHPGANYVIDRESG 421


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 213 VVETGMSEKNFSKALATSL*LVT-NLSSIFNENSWWLFLTFPLSLPMMFQVIFILSGAFF 37
           ++ TGM+   F + + +     +  +S    E  WW+FL +   +  M  ++  L  A F
Sbjct: 169 ILNTGMNISGFVEPIISIFGKESGTISQFLPEGYWWVFL-YTTCVLAMCCILCCLGSAIF 227

Query: 36  IKS 28
            K+
Sbjct: 228 AKA 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,083
Number of Sequences: 5004
Number of extensions: 34529
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)