Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0339 - 24513699-24516827                                         29   3.0  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    28   5.2  
09_04_0092 + 14548110-14548306,14548891-14549029,14549698-145498...    27   6.9  
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658...    27   9.1  

>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 275 IC*HVYAIIFQLLWGMNLEKW*LKLE 198
           +C   + I+   +WG NL+KW L +E
Sbjct: 252 LCGRKFLIVLDDVWGQNLQKWKLLIE 277


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +2

Query: 119  FSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKHVNK 274
            FSL  + K V+  +D      K F+ +P+    SL+       +LL  ++++
Sbjct: 1022 FSLSEEFKYVSVRQDEKMELAKLFNCVPIPVKESLDEPSAKINVLLQAYISR 1073


>09_04_0092 +
           14548110-14548306,14548891-14549029,14549698-14549815,
           14549901-14550127
          Length = 226

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 213 VVETGMSEKNFSKALATSL 157
           VV TGM E NFSK LA S+
Sbjct: 143 VVHTGMMEANFSKDLAFSM 161


>12_02_0700 +
           22259921-22260207,22264678-22264750,22265062-22265802,
           22265849-22266424,22266505-22266957
          Length = 709

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/66 (21%), Positives = 34/66 (51%)
 Frame = +2

Query: 86  ESGKVRNSHQEFSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKH 265
           E  +V+ +     + + DKL+++   +A+ F+K  +D+ + ++ + N++   A   L K 
Sbjct: 627 EEIEVQEALASLCVTVCDKLISTDPVLADRFDKIAADVCLDSSITANTTANTAFAALVKE 686

Query: 266 VNKCNE 283
             +  E
Sbjct: 687 AGEVVE 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,724,011
Number of Sequences: 37544
Number of extensions: 172390
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)