Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    27   6.2  

>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 141 LSSIFNENSWWLFLTFPLSLPMMFQVIFILSGAFFIKS 28
           LS++F+E  +W  + F    P+MF + FI  G FF  S
Sbjct: 370 LSAVFHE--YWFGVAFRCFYPVMFVLYFIFGGTFFAVS 405


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
            F35G12.8 protein.
          Length = 1549

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 95   KVRNSHQEFSLK-IDDKLVTSHKDVANAFEKFFSDIPV--STTTSLNSSPTAAEILLHKH 265
            K++   +E   K IDD+ V S K+    FEK    +       T   S  +AAE  L   
Sbjct: 963  KMKKKCEELMEKAIDDEEVKSKKETVERFEKQIKKLQTKGEEMTKKQSELSAAETKLEGE 1022

Query: 266  VNKCNE 283
            + KC+E
Sbjct: 1023 LKKCSE 1028


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 128 KIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKH 265
           ++ +   + H DVA AF    SDI + T +   S+  +  +  H+H
Sbjct: 738 QVSENQPSEHDDVAKAFMLLDSDIHLKTKSRKRSTQNSVAVGSHRH 783


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 83  RESGKVRNSHQEFSLKIDDKLVTSHKDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHK 262
           R+S K        S+    ++V         FE+FF D P   + S N  PT++    +K
Sbjct: 209 RKSAKKARGRPRGSVNKPRQMVKMEPQDDRFFEEFFIDAPPLQSMSSNEEPTSS----NK 264

Query: 263 HVNKC 277
             N+C
Sbjct: 265 ESNEC 269


>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
           protein T24C4.8 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 147 TNLSSIFNENSWWLFLTFPLSLPMMFQVIF 58
           +N +  F   SW +F++F L +P++  V+F
Sbjct: 46  SNSAGWFTAASWMVFISFGLFIPLILVVLF 75


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 150 VTNLSSIFNENSWWLFLTFPLSLPMMFQVIFILSGAFFIKS 28
           +TN   + + NSW + L F    P +  +IF+L+GAF + S
Sbjct: 114 ITNNRHLNSFNSWKIILWF--MGPPISGIIFMLTGAFIMSS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,429
Number of Sequences: 27780
Number of extensions: 186240
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)