Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical...    30   0.87 
Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical
           protein Y94H6A.2 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 162 ISHSCESVIWDSVFKLLIPVTQFFLNVFEFVNNI*IKKYMSKTINKKCMYVKK 4
           +SH  +++  D   K  I  + F++N    +  +   KYM  T+N  C Y K+
Sbjct: 27  LSHKMDALFGD--LKSFITTSHFYMNEVATIKTL--MKYMQDTMNNPCKYTKE 75


>Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical
           protein Y6G8.1 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 2   FFFTYIHFLFIVFDIYFLIYILFTNSNTLRK 94
           FF    HF F+V   YFL  IL  +S  L K
Sbjct: 57  FFSITNHFCFLVKTSYFLFVILLIDSTLLMK 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,596,007
Number of Sequences: 27780
Number of extensions: 166411
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)