Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   5.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   5.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 420 FQSRNSNYRGNKNSNYHYTDSY*ARRKIINM 512
           + + N+NY  N N+NY+       +  IIN+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 426 SRNSNYRGNKNSNY--HYTDSY 485
           S  +NY  N N+NY  +Y ++Y
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 420 FQSRNSNYRGNKNSNYHYTDSY*ARRKIINM 512
           + + N+NY  N N+NY+       +  IIN+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 426 SRNSNYRGNKNSNY--HYTDSY 485
           S  +NY  N N+NY  +Y ++Y
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNY 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 432 NSNYRGNKNSNYHYTDS 482
           N+NY  N  +NY+Y ++
Sbjct: 93  NNNYNNNNYNNYNYNNN 109


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 432 NSNYRGNKNSNYHYTDS 482
           N+NY+ N N+ Y+Y ++
Sbjct: 93  NNNYKYNYNNKYNYNNN 109


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 403 DARTTCHI-VSTYTADRLNGQRLESID 326
           D    C I      A+RLN Q +ESID
Sbjct: 464 DPINNCEIKAGEIDAERLNNQGIESID 490


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 432 NSNYRGNKNSNYHYTDSY 485
           N+NY+ N N+N +  ++Y
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 432 NSNYRGNKNSNYHYTDSY 485
           N+NY+ N N+N +  ++Y
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 432 NSNYRGNKNSNYHYTDSY 485
           N+NY+ N N+N +  ++Y
Sbjct: 326 NNNYKYNYNNNNYNNNNY 343


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 116 NLNTESHMTLSHECEINMALGF 181
           NL  + + TLS++C+++++  F
Sbjct: 119 NLLEDIYETLSYDCDVDVSTFF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,083
Number of Sequences: 438
Number of extensions: 2715
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)