Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F01f
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    28   3.8  
AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical...    27   5.0  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +1

Query: 103 IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 279
           I  Y   + ILY  ++ +    +++ F+ QTIS  +R   I  ++ F    L  S+R++V
Sbjct: 199 IGVYLSVYEILYLHMRLYPQHFENLPFELQTISYDLRLLAISSLNFFVYFVLTKSTRKIV 258

Query: 280 LR-YCCV-HIHRSAVF 321
           L+ +  V H+H S  F
Sbjct: 259 LKSFGSVNHLHLSQSF 274


>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +1

Query: 133 LYKIIQPFSMKHQSVVFKFQTISLGVRFEI*MI-----DSFSLIELDVSSRRLVLRYCCV 297
           L  I++PF+  +   +  F    L +  +I  I       F LI +   S + V RY CV
Sbjct: 57  LEMIMKPFTHNYNGALLSFNLCELNIPLKIRQIFILIWSQFYLIVISFISVQFVYRYLCV 116

Query: 298 HIHRSAVFVLVLKT 339
              +   +   LKT
Sbjct: 117 FNEQKTKYFDGLKT 130


>AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4d protein.
          Length = 49

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 389 GYSSKRRTTSGTWRTPPVFSTRTKTALRCMCTQQY 285
           G   K  T +   RTP   + RTK  LR +CT ++
Sbjct: 8   GSRVKTHTPTSHHRTPSPRTLRTKNVLRTICTPKF 42


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 103 IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 279
           I AY   + ILY  I+ +     S  F+FQTI+  +R   +  ++      L  S+R +V
Sbjct: 238 IGAYLSIYEILYLQIRLYPESFNSAPFEFQTITYSLRLLAVGSLNFCVYFVLTKSTRAMV 297

Query: 280 LRY 288
           L++
Sbjct: 298 LKF 300


>Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H1.13 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 402 SQLQRVQFQTENDVRNMAYTARLQYKNEDRAPV 304
           ++LQ  + Q  ++++NM ++ R+Q K E R+ +
Sbjct: 28  NELQLEEEQFRSNIQNMEHSMRMQAKEEQRSDI 60


>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 327 KNEDRAPVYVYTAVPQYQPSAAYIQ 253
           K  D A  Y+Y AV  Y PS  Y++
Sbjct: 312 KTIDEAQEYLYMAVMDYSPSTLYLK 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,141
Number of Sequences: 27780
Number of extensions: 213038
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)