Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319F01f
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 333 EDGRCTPCS*RRSPFGTVPAAAEIQAG 413
           ED     C  RRS   T  A+AE+Q G
Sbjct: 392 EDRGMYQCIVRRSEGDTAQASAELQLG 418


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 333 EDGRCTPCS*RRSPFGTVPAAAEIQAG 413
           ED     C  RRS   T  A+AE+Q G
Sbjct: 392 EDRGMYQCIVRRSEGDTAQASAELQLG 418


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 111 IPAVPLNPIQNHSTVFNETSKR 176
           +P  P+NP+Q    +F E   R
Sbjct: 19  LPRKPVNPVQELKALFAEPPVR 40


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 359 GTWRTPPVFSTRTKTALRCMC 297
           GTW   P  + R K     MC
Sbjct: 199 GTWSPDPAINRRLKETYSNMC 219



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 439 EFAGLLLHPPAWISAAAGTVPNGERRQEHGVHRPSSVQERRP 314
           E   L L PP  I ++    P       HG    S++  +RP
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP 665


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 359 GTWRTPPVFSTRTKTALRCMC 297
           GTW   P  + R K     MC
Sbjct: 199 GTWSPDPAINRRLKETYSNMC 219



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 439 EFAGLLLHPPAWISAAAGTVPNGERRQEHGVHRPSSVQERRP 314
           E   L L PP  I ++    P       HG    S++  +RP
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP 665


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 359 GTWRTPPVFSTRTKTALRCMC 297
           GTW   P  + R K     MC
Sbjct: 199 GTWSPDPAINRRLKETYSNMC 219



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 439 EFAGLLLHPPAWISAAAGTVPNGERRQEHGVHRPSSVQERRP 314
           E   L L PP  I ++    P       HG    S++  +RP
Sbjct: 624 ERCNLGLEPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP 665


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 22  DFIVYLNNLHKYL 60
           DF+  L+NLH+YL
Sbjct: 95  DFLNGLDNLHEYL 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,186
Number of Sequences: 438
Number of extensions: 2881
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)