Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319E05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.36 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 281 DPNESKVAMRKVAVPAHRYTPLKESWLKIF-TPIVEHLLLQVRFNTKTRNVEIKVGPETK 457
           DP E  V     A     YTPLKE     +  P +E L     F+T+     + VG E++
Sbjct: 179 DPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL----GFDTEGLLPPVWVGGESE 234

Query: 458 DIANLQKAADFVKAFIYGF 514
            +A L++  +  KA++  F
Sbjct: 235 ALARLERHLE-RKAWVASF 252


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 482 QLSVNLQYLLFLVRLLSQHSSFSC*TLLVAISV 384
           ++ +  QYLL L+R L Q S+    TLL   SV
Sbjct: 135 KVDMTRQYLLQLIRNLRQSSALDGVTLLADNSV 167


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 220 CGLFNLHTISGVI 182
           CG+ NLH + G++
Sbjct: 329 CGVHNLHGMPGIL 341


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 338 YICELGPQLFALQLYSH*GLNFFYVFF 258
           +IC   P +   QL++  G+  +Y FF
Sbjct: 456 FIC---PSIHFAQLFADRGMKVYYYFF 479


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 338 YICELGPQLFALQLYSH*GLNFFYVFF 258
           +IC   P +   QL++  G+  +Y FF
Sbjct: 456 FIC---PSIHFAQLFADRGMKVYYYFF 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,637
Number of Sequences: 438
Number of extensions: 2561
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)